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A toolbox of machine learning software to support microbiome analysis.
Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023.
Front Microbiol. 2023.
PMID: 38075858
Free PMC article.
Review.
APOLLO: A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites.
Heinken A, Hulshof TO, Nap B, Martinelli F, Basile A, O'Brolchain A, O'Sullivan NF, Gallagher C, Magee E, McDonagh F, Lalor I, Bergin M, Evans P, Daly R, Farrell R, Delaney RM, Hill S, McAuliffe SR, Kilgannon T, Fleming RMT, Thinnes CC, Thiele I.
Heinken A, et al. Among authors: nap b.
bioRxiv [Preprint]. 2023 Oct 3:2023.10.02.560573. doi: 10.1101/2023.10.02.560573.
bioRxiv. 2023.
PMID: 37873072
Free PMC article.
Preprint.
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Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine.
Heinken A, Hertel J, Acharya G, Ravcheev DA, Nyga M, Okpala OE, Hogan M, Magnúsdóttir S, Martinelli F, Nap B, Preciat G, Edirisinghe JN, Henry CS, Fleming RMT, Thiele I.
Heinken A, et al. Among authors: nap b.
Nat Biotechnol. 2023 Sep;41(9):1320-1331. doi: 10.1038/s41587-022-01628-0. Epub 2023 Jan 19.
Nat Biotechnol. 2023.
PMID: 36658342
Free PMC article.
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From Eat to trEat: engineering the mitochondrial Eat1 enzyme for enhanced ethyl acetate production in Escherichia coli.
Kruis AJ, Bohnenkamp AC, Nap B, Nielsen J, Mars AE, Wijffels RH, van der Oost J, Kengen SWM, Weusthuis RA.
Kruis AJ, et al. Among authors: nap b.
Biotechnol Biofuels. 2020 Apr 19;13:76. doi: 10.1186/s13068-020-01711-1. eCollection 2020.
Biotechnol Biofuels. 2020.
PMID: 32328168
Free PMC article.
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