Nagarajan N - Search Results

1

INC-Seq: accurate single molecule reads using nanopore sequencing.

Li C, Chng KR, Boey EJ, Ng AH, Wilm A, Nagarajan N. Li C, et al. Among authors: nagarajan n. Gigascience. 2016 Aug 2;5(1):34. doi: 10.1186/s13742-016-0140-7. Gigascience. 2016. PMID: 27485345 Free PMC article.

2

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets.

Wilm A, Aw PP, Bertrand D, Yeo GH, Ong SH, Wong CH, Khor CC, Petric R, Hibberd ML, Nagarajan N. Wilm A, et al. Among authors: nagarajan n. Nucleic Acids Res. 2012 Dec;40(22):11189-201. doi: 10.1093/nar/gks918. Epub 2012 Oct 12. Nucleic Acids Res. 2012. PMID: 23066108 Free PMC article.

3

Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences.

Ong SH, Kukkillaya VU, Wilm A, Lay C, Ho EX, Low L, Hibberd ML, Nagarajan N. Ong SH, et al. Among authors: nagarajan n. PLoS One. 2013 Apr 8;8(4):e60811. doi: 10.1371/journal.pone.0060811. Print 2013. PLoS One. 2013. PMID: 23579286 Free PMC article.

4

Next-generation whole genome sequencing of dengue virus.

Aw PP, de Sessions PF, Wilm A, Hoang LT, Nagarajan N, Sessions OM, Hibberd ML. Aw PP, et al. Among authors: nagarajan n. Methods Mol Biol. 2014;1138:175-95. doi: 10.1007/978-1-4939-0348-1_12. Methods Mol Biol. 2014. PMID: 24696338

5

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls.

Wang S, Chng KR, Wilm A, Zhao S, Yang KL, Nagarajan N, He J. Wang S, et al. Among authors: nagarajan n. Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12103-8. doi: 10.1073/pnas.1404845111. Epub 2014 Jul 15. Proc Natl Acad Sci U S A. 2014. PMID: 25028492 Free PMC article.

6

Draft Genome Sequence of Polychlorinated Biphenyl-Dechlorinating Dehalococcoides mccartyi Strain SG1, Which Carries a Circular Putative Plasmid.

Wang S, Chng KR, Wu C, Wilm A, Nagarajan N, He J. Wang S, et al. Among authors: nagarajan n. Genome Announc. 2014 Oct 2;2(5):e00901-14. doi: 10.1128/genomeA.00901-14. Genome Announc. 2014. PMID: 25278523 Free PMC article.

7

BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads.

Hong LZ, Hong S, Wong HT, Aw PP, Cheng Y, Wilm A, de Sessions PF, Lim SG, Nagarajan N, Hibberd ML, Quake SR, Burkholder WF. Hong LZ, et al. Among authors: nagarajan n. Genome Biol. 2014;15(11):517. doi: 10.1186/PREACCEPT-6768001251451949. Genome Biol. 2014. PMID: 25406369 Free PMC article.

8

Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles.

Bertrand D, Chng KR, Sherbaf FG, Kiesel A, Chia BK, Sia YY, Huang SK, Hoon DS, Liu ET, Hillmer A, Nagarajan N. Bertrand D, et al. Among authors: nagarajan n. Nucleic Acids Res. 2015 Apr 20;43(7):e44. doi: 10.1093/nar/gku1393. Epub 2015 Jan 8. Nucleic Acids Res. 2015. PMID: 25572314 Free PMC article.

9

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection.

Ewing AD, Houlahan KE, Hu Y, Ellrott K, Caloian C, Yamaguchi TN, Bare JC, P'ng C, Waggott D, Sabelnykova VY; ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants; Kellen MR, Norman TC, Haussler D, Friend SH, Stolovitzky G, Margolin AA, Stuart JM, Boutros PC. Ewing AD, et al. Nat Methods. 2015 Jul;12(7):623-30. doi: 10.1038/nmeth.3407. Epub 2015 May 18. Nat Methods. 2015. PMID: 25984700 Free PMC article.

10

Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission.

Sim S, Aw PP, Wilm A, Teoh G, Hue KD, Nguyen NM, Nagarajan N, Simmons CP, Hibberd ML. Sim S, et al. Among authors: nagarajan n. PLoS Negl Trop Dis. 2015 Sep 1;9(9):e0004052. doi: 10.1371/journal.pntd.0004052. eCollection 2015. PLoS Negl Trop Dis. 2015. PMID: 26325059 Free PMC article.

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