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The metaRbolomics Toolbox in Bioconductor and beyond.
Stanstrup J, Broeckling CD, Helmus R, Hoffmann N, Mathé E, Naake T, Nicolotti L, Peters K, Rainer J, Salek RM, Schulze T, Schymanski EL, Stravs MA, Thévenot EA, Treutler H, Weber RJM, Willighagen E, Witting M, Neumann S. Stanstrup J, et al. Among authors: naake t. Metabolites. 2019 Sep 23;9(10):200. doi: 10.3390/metabo9100200. Metabolites. 2019. PMID: 31548506 Free PMC article. Review.
Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation.
Amara A, Frainay C, Jourdan F, Naake T, Neumann S, Novoa-Del-Toro EM, Salek RM, Salzer L, Scharfenberg S, Witting M. Amara A, et al. Among authors: naake t. Front Mol Biosci. 2022 Mar 8;9:841373. doi: 10.3389/fmolb.2022.841373. eCollection 2022. Front Mol Biosci. 2022. PMID: 35350714 Free PMC article. Review.
Visualization of proteomics data using R and bioconductor.
Gatto L, Breckels LM, Naake T, Gibb S. Gatto L, et al. Among authors: naake t. Proteomics. 2015 Apr;15(8):1375-89. doi: 10.1002/pmic.201400392. Proteomics. 2015. PMID: 25690415 Free PMC article. Review.
Mass Spectrometry-Based Untargeted Plant Metabolomics.
Perez de Souza L, Alseekh S, Naake T, Fernie A. Perez de Souza L, et al. Among authors: naake t. Curr Protoc Plant Biol. 2019 Dec;4(4):e20100. doi: 10.1002/cppb.20100. Curr Protoc Plant Biol. 2019. PMID: 31743625
A draft map of the mouse pluripotent stem cell spatial proteome.
Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Martinez Arias A, Lilley KS. Christoforou A, et al. Among authors: naake t. Nat Commun. 2016 Jan 12;7:8992. doi: 10.1038/ncomms9992. Nat Commun. 2016. PMID: 26754106 Free PMC article.
Computational approaches that aid annotation in metabolomics.
Perez de Souza L, Naake T, Fernie AR. Perez de Souza L, et al. Among authors: naake t. Trends Plant Sci. 2022 Oct;27(10):1077-1078. doi: 10.1016/j.tplants.2022.06.010. Epub 2022 Jul 22. Trends Plant Sci. 2022. PMID: 35879193 Free article. No abstract available.
21 results