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NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index.
Viruses. 2020 Dec 10;12(12):1424. doi: 10.3390/v12121424.
Viruses. 2020.
PMID: 33322070
Free PMC article.
Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins.
Muralidharan HS, Shah N, Meisel JS, Pop M.
Muralidharan HS, et al.
Front Microbiol. 2021 Feb 24;12:638561. doi: 10.3389/fmicb.2021.638561. eCollection 2021.
Front Microbiol. 2021.
PMID: 33717033
Free PMC article.
Item in Clipboard
The impact of transitive annotation on the training of taxonomic classifiers.
Muralidharan HS, Fox NY, Pop M.
Muralidharan HS, et al.
Front Microbiol. 2024 Jan 3;14:1240957. doi: 10.3389/fmicb.2023.1240957. eCollection 2023.
Front Microbiol. 2024.
PMID: 38235435
Free PMC article.
Item in Clipboard
Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes.
Commichaux S, Luan T, Muralidharan HS, Pop M.
Commichaux S, et al. Among authors: muralidharan hs.
bioRxiv [Preprint]. 2023 Dec 14:2023.12.13.571439. doi: 10.1101/2023.12.13.571439.
bioRxiv. 2023.
PMID: 38168205
Free PMC article.
Preprint.
Item in Clipboard
Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population.
Birzu G, Muralidharan HS, Goudeau D, Malmstrom RR, Fisher DS, Bhaya D.
Birzu G, et al. Among authors: muralidharan hs.
bioRxiv [Preprint]. 2023 Jun 7:2023.06.06.543983. doi: 10.1101/2023.06.06.543983.
bioRxiv. 2023.
PMID: 37333348
Free PMC article.
Preprint.
Item in Clipboard
SCRAPT: an iterative algorithm for clustering large 16S rRNA gene data sets.
Luan T, Muralidharan HS, Alshehri M, Mittra I, Pop M.
Luan T, et al. Among authors: muralidharan hs.
Nucleic Acids Res. 2023 May 8;51(8):e46. doi: 10.1093/nar/gkad158.
Nucleic Acids Res. 2023.
PMID: 36912074
Free PMC article.
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