Murali TM - Search Results

1

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 -human interactome.

Kshirsagar M, Tasnina N, Ward MD, Law JN, Murali TM, Lavista Ferres JM, Bowman GR, Klein-Seetharaman J. Kshirsagar M, et al. Among authors: murali tm. Pac Symp Biocomput. 2021;26:154-165. Pac Symp Biocomput. 2021. PMID: 33691013 Free article.

2

Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2.

Law JN, Akers K, Tasnina N, Santina CMD, Deutsch S, Kshirsagar M, Klein-Seetharaman J, Crovella M, Rajagopalan P, Kasif S, Murali TM. Law JN, et al. Among authors: murali tm. Gigascience. 2021 Dec 29;10(12):giab082. doi: 10.1093/gigascience/giab082. Gigascience. 2021. PMID: 34966926 Free PMC article.

3

Accurate and efficient gene function prediction using a multi-bacterial network.

Law JN, Kale SD, Murali TM. Law JN, et al. Among authors: murali tm. Bioinformatics. 2021 May 5;37(6):800-806. doi: 10.1093/bioinformatics/btaa885. Bioinformatics. 2021. PMID: 33063084

4

Automating the PathLinker app for Cytoscape.

Huang LJ, Law JN, Murali TM. Huang LJ, et al. Among authors: murali tm. F1000Res. 2018 Jun 12;7:727. doi: 10.12688/f1000research.14616.1. eCollection 2018. F1000Res. 2018. PMID: 30057757 Free PMC article.

5

The PathLinker app: Connect the dots in protein interaction networks.

Gil DP, Law JN, Murali TM. Gil DP, et al. Among authors: murali tm. F1000Res. 2017 Jan 20;6:58. doi: 10.12688/f1000research.9909.1. eCollection 2017. F1000Res. 2017. PMID: 28413614 Free PMC article.

6

Large-scale protein function prediction using heterogeneous ensembles.

Wang L, Law J, Kale SD, Murali TM, Pandey G. Wang L, et al. Among authors: murali tm. F1000Res. 2018 Sep 28;7:ISCB Comm J-1577. doi: 10.12688/f1000research.16415.1. eCollection 2018. F1000Res. 2018. PMID: 30450194 Free PMC article.

7

Integrating multimodal data through interpretable heterogeneous ensembles.

Li YC, Wang L, Law JN, Murali TM, Pandey G. Li YC, et al. Among authors: murali tm. Bioinform Adv. 2022 Sep 12;2(1):vbac065. doi: 10.1093/bioadv/vbac065. eCollection 2022. Bioinform Adv. 2022. PMID: 36158455 Free PMC article.

8

Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data.

Pratapa A, Jalihal AP, Law JN, Bharadwaj A, Murali TM. Pratapa A, et al. Among authors: murali tm. Nat Methods. 2020 Feb;17(2):147-154. doi: 10.1038/s41592-019-0690-6. Epub 2020 Jan 6. Nat Methods. 2020. PMID: 31907445 Free PMC article.

9

Systems biology characterization of engineered tissues.

Rajagopalan P, Kasif S, Murali TM. Rajagopalan P, et al. Among authors: murali tm. Annu Rev Biomed Eng. 2013;15:55-70. doi: 10.1146/annurev-bioeng-071811-150120. Annu Rev Biomed Eng. 2013. PMID: 23862675 Review.

10

Extracting conserved gene expression motifs from gene expression data.

Murali TM, Kasif S. Murali TM, et al. Pac Symp Biocomput. 2003:77-88. Pac Symp Biocomput. 2003. PMID: 12603019 Free article.

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