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Understanding the role of the topology in protein folding by computational inverse folding experiments.
Comput Biol Chem. 2008 Aug;32(4):233-9. doi: 10.1016/j.compbiolchem.2008.03.015. Epub 2008 Apr 8.
Comput Biol Chem. 2008.
PMID: 18479970
Exploiting symmetry properties of the discretizable molecular distance geometry problem.
Mucherino A, Lavor C, Liberti L.
Mucherino A, et al.
J Bioinform Comput Biol. 2012 Jun;10(3):1242009. doi: 10.1142/S0219720012420097.
J Bioinform Comput Biol. 2012.
PMID: 22809385
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An algorithm to enumerate all possible protein conformations verifying a set of distance constraints.
Cassioli A, Bardiaux B, Bouvier G, Mucherino A, Alves R, Liberti L, Nilges M, Lavor C, Malliavin TE.
Cassioli A, et al. Among authors: mucherino a.
BMC Bioinformatics. 2015 Jan 28;16:23. doi: 10.1186/s12859-015-0451-1.
BMC Bioinformatics. 2015.
PMID: 25627244
Free PMC article.
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Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach.
Malliavin TE, Mucherino A, Lavor C, Liberti L.
Malliavin TE, et al. Among authors: mucherino a.
J Chem Inf Model. 2019 Oct 28;59(10):4486-4503. doi: 10.1021/acs.jcim.9b00215. Epub 2019 Sep 6.
J Chem Inf Model. 2019.
PMID: 31442036
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Low-resolution description of the conformational space for intrinsically disordered proteins.
Förster D, Idier J, Liberti L, Mucherino A, Lin JH, Malliavin TE.
Förster D, et al. Among authors: mucherino a.
Sci Rep. 2022 Nov 9;12(1):19057. doi: 10.1038/s41598-022-21648-9.
Sci Rep. 2022.
PMID: 36352011
Free PMC article.
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