Morris QD - Search Results

1

The evolutionary history of 2,658 cancers.

Gerstung M, Jolly C, Leshchiner I, Dentro SC, Gonzalez S, Rosebrock D, Mitchell TJ, Rubanova Y, Anur P, Yu K, Tarabichi M, Deshwar A, Wintersinger J, Kleinheinz K, Vázquez-García I, Haase K, Jerman L, Sengupta S, Macintyre G, Malikic S, Donmez N, Livitz DG, Cmero M, Demeulemeester J, Schumacher S, Fan Y, Yao X, Lee J, Schlesner M, Boutros PC, Bowtell DD, Zhu H, Getz G, Imielinski M, Beroukhim R, Sahinalp SC, Ji Y, Peifer M, Markowetz F, Mustonen V, Yuan K, Wang W, Morris QD; PCAWG Evolution & Heterogeneity Working Group; Spellman PT, Wedge DC, Van Loo P; PCAWG Consortium. Gerstung M, et al. Among authors: morris qd. Nature. 2020 Feb;578(7793):122-128. doi: 10.1038/s41586-019-1907-7. Epub 2020 Feb 6. Nature. 2020. PMID: 32025013 Free PMC article.

2

Unsupervised detection of genes of influence in lung cancer using biological networks.

Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD. Goldenberg A, et al. Among authors: morris qd. Bioinformatics. 2011 Nov 15;27(22):3166-72. doi: 10.1093/bioinformatics/btr533. Epub 2011 Sep 28. Bioinformatics. 2011. PMID: 21965819

3

Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression.

Mezlini AM, Wang B, Deshwar A, Morris Q, Goldenberg A. Mezlini AM, et al. PLoS One. 2013 Oct 2;8(10):e73168. doi: 10.1371/journal.pone.0073168. eCollection 2013. PLoS One. 2013. PMID: 24098326 Free PMC article.

4

PLIDA: cross-platform gene expression normalization using perturbed topic models.

Deshwar AG, Morris Q. Deshwar AG, et al. Bioinformatics. 2014 Apr 1;30(7):956-61. doi: 10.1093/bioinformatics/btt574. Epub 2013 Oct 11. Bioinformatics. 2014. PMID: 24123674

5

An efficient algorithm to integrate network and attribute data for gene function prediction.

Vembu S, Morris Q. Vembu S, et al. Pac Symp Biocomput. 2014:388-99. Pac Symp Biocomput. 2014. PMID: 24297564 Free article.

6

Inferring clonal evolution of tumors from single nucleotide somatic mutations.

Jiao W, Vembu S, Deshwar AG, Stein L, Morris Q. Jiao W, et al. BMC Bioinformatics. 2014 Feb 1;15:35. doi: 10.1186/1471-2105-15-35. BMC Bioinformatics. 2014. PMID: 24484323 Free PMC article.

7

Comparing nonparametric Bayesian tree priors for clonal reconstruction of tumors.

Deshwar AG, Vembu S, Morris Q. Deshwar AG, et al. Pac Symp Biocomput. 2015:20-31. Pac Symp Biocomput. 2015. PMID: 25592565 Free article.

8

PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.

Deshwar AG, Vembu S, Yung CK, Jang GH, Stein L, Morris Q. Deshwar AG, et al. Genome Biol. 2015 Feb 13;16(1):35. doi: 10.1186/s13059-015-0602-8. Genome Biol. 2015. PMID: 25786235 Free PMC article.

9

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles.

Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC. Anghel CV, et al. Among authors: morris qd. BMC Bioinformatics. 2015 May 14;16:156. doi: 10.1186/s12859-015-0597-x. BMC Bioinformatics. 2015. PMID: 25972088 Free PMC article.

10

The Evolutionary Landscape of Localized Prostate Cancers Drives Clinical Aggression.

Espiritu SMG, Liu LY, Rubanova Y, Bhandari V, Holgersen EM, Szyca LM, Fox NS, Chua MLK, Yamaguchi TN, Heisler LE, Livingstone J, Wintersinger J, Yousif F, Lalonde E, Rouette A, Salcedo A, Houlahan KE, Li CH, Huang V, Fraser M, van der Kwast T, Morris QD, Bristow RG, Boutros PC. Espiritu SMG, et al. Among authors: morris qd. Cell. 2018 May 3;173(4):1003-1013.e15. doi: 10.1016/j.cell.2018.03.029. Epub 2018 Apr 19. Cell. 2018. PMID: 29681457 Free article.

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