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MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: monk jm. Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. Nat Biotechnol. 2020. PMID: 32123384 Free PMC article. No abstract available.
Optimizing genome-scale network reconstructions.
Monk J, Nogales J, Palsson BO. Monk J, et al. Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. Nat Biotechnol. 2014. PMID: 24811519 No abstract available.
Genetics. Predicting microbial growth.
Monk J, Palsson BO. Monk J, et al. Science. 2014 Jun 27;344(6191):1448-9. doi: 10.1126/science.1253388. Science. 2014. PMID: 24970063 No abstract available.
Model-driven discovery of underground metabolic functions in Escherichia coli.
Guzmán GI, Utrilla J, Nurk S, Brunk E, Monk JM, Ebrahim A, Palsson BO, Feist AM. Guzmán GI, et al. Among authors: monk jm. Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):929-34. doi: 10.1073/pnas.1414218112. Epub 2015 Jan 6. Proc Natl Acad Sci U S A. 2015. PMID: 25564669 Free PMC article.
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.
Yang L, Tan J, O'Brien EJ, Monk JM, Kim D, Li HJ, Charusanti P, Ebrahim A, Lloyd CJ, Yurkovich JT, Du B, Dräger A, Thomas A, Sun Y, Saunders MA, Palsson BO. Yang L, et al. Among authors: monk jm. Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10810-5. doi: 10.1073/pnas.1501384112. Epub 2015 Aug 10. Proc Natl Acad Sci U S A. 2015. PMID: 26261351 Free PMC article.
Systems biology of the structural proteome.
Brunk E, Mih N, Monk J, Zhang Z, O'Brien EJ, Bliven SE, Chen K, Chang RL, Bourne PE, Palsson BO. Brunk E, et al. BMC Syst Biol. 2016 Mar 11;10:26. doi: 10.1186/s12918-016-0271-6. BMC Syst Biol. 2016. PMID: 26969117 Free PMC article.
147 results