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Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.
Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.
Plant J. 2015.
PMID: 26252423
Free PMC article.
When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.
Lonardi S, Mirebrahim H, Wanamaker S, Alpert M, Ciardo G, Duma D, Close TJ.
Lonardi S, et al. Among authors: mirebrahim h.
Bioinformatics. 2015 Sep 15;31(18):2972-80. doi: 10.1093/bioinformatics/btv311. Epub 2015 May 20.
Bioinformatics. 2015.
PMID: 25995232
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Genome resources for climate-resilient cowpea, an essential crop for food security.
Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.
Muñoz-Amatriaín M, et al. Among authors: mirebrahim h.
Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.
Plant J. 2017.
PMID: 27775877
Free article.
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De novo meta-assembly of ultra-deep sequencing data.
Mirebrahim H, Close TJ, Lonardi S.
Mirebrahim H, et al.
Bioinformatics. 2015 Jun 15;31(12):i9-16. doi: 10.1093/bioinformatics/btv226.
Bioinformatics. 2015.
PMID: 26072514
Free PMC article.
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A comparative evaluation of genome assembly reconciliation tools.
Alhakami H, Mirebrahim H, Lonardi S.
Alhakami H, et al. Among authors: mirebrahim h.
Genome Biol. 2017 May 18;18(1):93. doi: 10.1186/s13059-017-1213-3.
Genome Biol. 2017.
PMID: 28521789
Free PMC article.
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