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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2011 1
2012 2
2013 2
2014 9
2015 9
2016 5
2017 5
2018 12
2019 10
2020 10
2021 9
2022 12
2023 7
2024 5

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93 results

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Page 1
American Gut: an Open Platform for Citizen Science Microbiome Research.
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R. McDonald D, et al. mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29795809 Free PMC article.
Phylogenomic branch length estimation using quartets.
Tabatabaee Y, Zhang C, Warnow T, Mirarab S. Tabatabaee Y, et al. Among authors: mirarab s. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i185-i193. doi: 10.1093/bioinformatics/btad221. Bioinformatics. 2023. PMID: 37387151 Free PMC article.
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.
Chen L, Qiu Q, Jiang Y, Wang K, Lin Z, Li Z, Bibi F, Yang Y, Wang J, Nie W, Su W, Liu G, Li Q, Fu W, Pan X, Liu C, Yang J, Zhang C, Yin Y, Wang Y, Zhao Y, Zhang C, Wang Z, Qin Y, Liu W, Wang B, Ren Y, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan W, Zhao R, Zhu W, Wang Y, Duan S, Gao Y, Zhang YE, Chen C, Hvilsom C, Epps CW, Chemnick LG, Dong Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HA, Zhang G, Heller R, Wang W. Chen L, et al. Among authors: mirarab s. Science. 2019 Jun 21;364(6446):eaav6202. doi: 10.1126/science.aav6202. Science. 2019. PMID: 31221828
Distance-Based Phylogenetic Placement with Statistical Support.
Hasan NB, Balaban M, Biswas A, Bayzid MS, Mirarab S. Hasan NB, et al. Among authors: mirarab s. Biology (Basel). 2022 Aug 12;11(8):1212. doi: 10.3390/biology11081212. Biology (Basel). 2022. PMID: 36009839 Free PMC article.
Log Transformation Improves Dating of Phylogenies.
Mai U, Mirarab S. Mai U, et al. Among authors: mirarab s. Mol Biol Evol. 2021 Mar 9;38(3):1151-1167. doi: 10.1093/molbev/msaa222. Mol Biol Evol. 2021. PMID: 32886788 Free PMC article.
Author Correction: Greengenes2 unifies microbial data in a single reference tree.
McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. McDonald D, et al. Among authors: mirarab s. Nat Biotechnol. 2023 Oct 18. doi: 10.1038/s41587-023-02026-w. Online ahead of print. Nat Biotechnol. 2023. PMID: 37853258 No abstract available.
Multi-allele species reconstruction using ASTRAL.
Rabiee M, Sayyari E, Mirarab S. Rabiee M, et al. Among authors: mirarab s. Mol Phylogenet Evol. 2019 Jan;130:286-296. doi: 10.1016/j.ympev.2018.10.033. Epub 2018 Oct 26. Mol Phylogenet Evol. 2019. PMID: 30393186
A communal catalogue reveals Earth's multiscale microbial diversity.
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium. Thompson LR, et al. Among authors: mirarab s. Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1. Nature. 2017. PMID: 29088705 Free PMC article.
93 results