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Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution.
Cell. 2022 May 26;185(11):1905-1923.e25. doi: 10.1016/j.cell.2022.04.015. Epub 2022 May 5.
Cell. 2022.
PMID: 35523183
Free PMC article.
Modular, efficient and constant-memory single-cell RNA-seq preprocessing.
Melsted P, Booeshaghi AS, Liu L, Gao F, Lu L, Min KHJ, da Veiga Beltrame E, Hjörleifsson KE, Gehring J, Pachter L.
Melsted P, et al. Among authors: min khj.
Nat Biotechnol. 2021 Jul;39(7):813-818. doi: 10.1038/s41587-021-00870-2. Epub 2021 Apr 1.
Nat Biotechnol. 2021.
PMID: 33795888
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Quantifying orthogonal barcodes for sequence census assays.
Booeshaghi AS, Min KHJ, Gehring J, Pachter L.
Booeshaghi AS, et al. Among authors: min khj.
Bioinform Adv. 2023 Dec 20;4(1):vbad181. doi: 10.1093/bioadv/vbad181. eCollection 2024.
Bioinform Adv. 2023.
PMID: 38213823
Free PMC article.
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Low-cost, scalable, and automated fluid sampling for fluidics applications.
Booeshaghi AS, Kil YA, Min KHJ, Gehring J, Pachter L.
Booeshaghi AS, et al. Among authors: min khj.
HardwareX. 2021 May 31;10:e00201. doi: 10.1016/j.ohx.2021.e00201. eCollection 2021 Oct.
HardwareX. 2021.
PMID: 35607693
Free PMC article.
Item in Clipboard
Metadata retrieval from sequence databases with ffq.
Gálvez-Merchán Á, Min KHJ, Pachter L, Booeshaghi AS.
Gálvez-Merchán Á, et al. Among authors: min khj.
Bioinformatics. 2023 Jan 1;39(1):btac667. doi: 10.1093/bioinformatics/btac667.
Bioinformatics. 2023.
PMID: 36610997
Free PMC article.
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kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq.
Sullivan DK, Min KHJ, Hjörleifsson KE, Luebbert L, Holley G, Moses L, Gustafsson J, Bray NL, Pimentel H, Booeshaghi AS, Melsted P, Pachter L.
Sullivan DK, et al. Among authors: min khj.
bioRxiv [Preprint]. 2024 Jan 23:2023.11.21.568164. doi: 10.1101/2023.11.21.568164.
bioRxiv. 2024.
PMID: 38045414
Free PMC article.
Preprint.
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