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The RNA-binding protein ILF3 binds to transposable element sequences in SINEUP lncRNAs.
Fasolo F, Patrucco L, Volpe M, Bon C, Peano C, Mignone F, Carninci P, Persichetti F, Santoro C, Zucchelli S, Sblattero D, Sanges R, Cotella D, Gustincich S. Fasolo F, et al. Among authors: mignone f. FASEB J. 2019 Dec;33(12):13572-13589. doi: 10.1096/fj.201901618RR. Epub 2019 Oct 25. FASEB J. 2019. PMID: 31570000 Free PMC article.
This work unveils the existence of a specific interaction between embedded TEs and an RNA-binding protein, strengthening the model of TEs as functional modules in lncRNAs.-Fasolo, F., Patrucco, L., Volpe, M., Bon, C., Peano, C., Mignone, F., Carninci, P., Per …
This work unveils the existence of a specific interaction between embedded TEs and an RNA-binding protein, strengthening the model of TEs as …
Rapid interactome profiling by massive sequencing.
Di Niro R, Sulic AM, Mignone F, D'Angelo S, Bordoni R, Iacono M, Marzari R, Gaiotto T, Lavric M, Bradbury AR, Biancone L, Zevin-Sonkin D, De Bellis G, Santoro C, Sblattero D. Di Niro R, et al. Among authors: mignone f. Nucleic Acids Res. 2010 May;38(9):e110. doi: 10.1093/nar/gkq052. Epub 2010 Feb 9. Nucleic Acids Res. 2010. PMID: 20144949 Free PMC article.
Discrimination of non-protein-coding transcripts from protein-coding mRNA.
Frith MC, Bailey TL, Kasukawa T, Mignone F, Kummerfeld SK, Madera M, Sunkara S, Furuno M, Bult CJ, Quackenbush J, Kai C, Kawai J, Carninci P, Hayashizaki Y, Pesole G, Mattick JS. Frith MC, et al. Among authors: mignone f. RNA Biol. 2006 Jan-Mar;3(1):40-8. doi: 10.4161/rna.3.1.2789. Epub 2006 Apr 3. RNA Biol. 2006. PMID: 17114936
A Metabologenomic approach reveals alterations in the gut microbiota of a mouse model of Alzheimer's disease.
Favero F, Barberis E, Gagliardi M, Espinoza S, Contu L, Gustincich S, Boccafoschi F, Borsotti C, Lim D, Rubino V, Mignone F, Pasolli E, Manfredi M, Zucchelli S, Corà D, Corazzari M. Favero F, et al. Among authors: mignone f. PLoS One. 2022 Aug 24;17(8):e0273036. doi: 10.1371/journal.pone.0273036. eCollection 2022. PLoS One. 2022. PMID: 36001607 Free PMC article.
Profiling celiac disease antibody repertoire.
D'Angelo S, Mignone F, Deantonio C, Di Niro R, Bordoni R, Marzari R, De Bellis G, Not T, Ferrara F, Bradbury A, Santoro C, Sblattero D. D'Angelo S, et al. Among authors: mignone f. Clin Immunol. 2013 Jul;148(1):99-109. doi: 10.1016/j.clim.2013.04.009. Epub 2013 Apr 22. Clin Immunol. 2013. PMID: 23685219
NGS-Trex: Next Generation Sequencing Transcriptome profile explorer.
Boria I, Boatti L, Pesole G, Mignone F. Boria I, et al. Among authors: mignone f. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S10. doi: 10.1186/1471-2105-14-S7-S10. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815181 Free PMC article.
The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, … See abstract for full author list ➔ Carninci P, et al. Among authors: mignone f. Science. 2005 Sep 2;309(5740):1559-63. doi: 10.1126/science.1112014. Science. 2005. PMID: 16141072
159 results