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A local platform for user-friendly FAIR data management and reproducible analytics.
Wieser F, Stryeck S, Lang K, Hahn C, Thallinger GG, Feichtinger J, Hack P, Stepponat M, Merchant N, Lindstaedt S, Oberdorfer G. Wieser F, et al. Among authors: merchant n. J Biotechnol. 2021 Nov 20;341:43-50. doi: 10.1016/j.jbiotec.2021.08.004. Epub 2021 Aug 13. J Biotechnol. 2021. PMID: 34400238 Free article.
Overcoming the Law of the Hidden in Cyberinfrastructures.
Bucksch A, Das A, Schneider H, Merchant N, Weitz JS. Bucksch A, et al. Among authors: merchant n. Trends Plant Sci. 2017 Feb;22(2):117-123. doi: 10.1016/j.tplants.2016.11.014. Epub 2016 Dec 24. Trends Plant Sci. 2017. PMID: 28027865 Review.
PGen: large-scale genomic variations analysis workflow and browser in SoyKB.
Liu Y, Khan SM, Wang J, Rynge M, Zhang Y, Zeng S, Chen S, Maldonado Dos Santos JV, Valliyodan B, Calyam PP, Merchant N, Nguyen HT, Xu D, Joshi T. Liu Y, et al. Among authors: merchant n. BMC Bioinformatics. 2016 Oct 6;17(Suppl 13):337. doi: 10.1186/s12859-016-1227-y. BMC Bioinformatics. 2016. PMID: 27766951 Free PMC article.
The iPlant Collaborative: Cyberinfrastructure for Plant Biology.
Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D. Goff SA, et al. Among authors: merchant n. Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011. Front Plant Sci. 2011. PMID: 22645531 Free PMC article.
Ten simple rules for organizing a data science workshop.
Ponsero A, Bartelme R, de Oliveira Almeida G, Bigelow A, Tuteja R, Ellingson H, Swetnam T, Merchant N, Oxnam M, Lyons E. Ponsero A, et al. Among authors: merchant n. PLoS Comput Biol. 2020 Oct 22;16(10):e1008226. doi: 10.1371/journal.pcbi.1008226. eCollection 2020 Oct. PLoS Comput Biol. 2020. PMID: 33090991 Free PMC article. No abstract available.
Ten simple rules to cultivate transdisciplinary collaboration in data science.
Sahneh F, Balk MA, Kisley M, Chan CK, Fox M, Nord B, Lyons E, Swetnam T, Huppenkothen D, Sutherland W, Walls RL, Quinn DP, Tarin T, LeBauer D, Ribes D, Birnie DP 3rd, Lushbough C, Carr E, Nearing G, Fischer J, Tyle K, Carrasco L, Lang M, Rose PW, Rushforth RR, Roy S, Matheson T, Lee T, Brown CT, Teal TK, Papeș M, Kobourov S, Merchant N. Sahneh F, et al. Among authors: merchant n. PLoS Comput Biol. 2021 May 13;17(5):e1008879. doi: 10.1371/journal.pcbi.1008879. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33983959 Free PMC article. No abstract available.
Bringing your tools to CyVerse Discovery Environment using Docker.
Devisetty UK, Kennedy K, Sarando P, Merchant N, Lyons E. Devisetty UK, et al. Among authors: merchant n. F1000Res. 2016 Jun 21;5:1442. doi: 10.12688/f1000research.8935.1. eCollection 2016. F1000Res. 2016. PMID: 27803802 Free PMC article.
Using the iPlant collaborative discovery environment.
Oliver SL, Lenards AJ, Barthelson RA, Merchant N, McKay SJ. Oliver SL, et al. Among authors: merchant n. Curr Protoc Bioinformatics. 2013 Jun;Chapter 1:1.22.1-1.22.26. doi: 10.1002/0471250953.bi0122s42. Curr Protoc Bioinformatics. 2013. PMID: 23749752
556 results