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Optimising orbit counting of arbitrary order by equation selection.
BMC Bioinformatics. 2019 Jan 15;20(1):27. doi: 10.1186/s12859-018-2483-9.
BMC Bioinformatics. 2019.
PMID: 30646859
Free PMC article.
An Algorithm to Automatically Generate the Combinatorial Orbit Counting Equations.
Melckenbeeck I, Audenaert P, Michoel T, Colle D, Pickavet M.
Melckenbeeck I, et al.
PLoS One. 2016 Jan 21;11(1):e0147078. doi: 10.1371/journal.pone.0147078. eCollection 2016.
PLoS One. 2016.
PMID: 26797021
Free PMC article.
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A Cytoscape app for motif enumeration with ISMAGS.
Van Parys T, Melckenbeeck I, Houbraken M, Audenaert P, Colle D, Pickavet M, Demeester P, Van de Peer Y.
Van Parys T, et al. Among authors: melckenbeeck i.
Bioinformatics. 2017 Feb 1;33(3):461-463. doi: 10.1093/bioinformatics/btw626.
Bioinformatics. 2017.
PMID: 28158465
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Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations.
Melckenbeeck I, Audenaert P, Colle D, Pickavet M.
Melckenbeeck I, et al.
Bioinformatics. 2018 Apr 15;34(8):1372-1380. doi: 10.1093/bioinformatics/btx758.
Bioinformatics. 2018.
PMID: 29186327
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