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HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.
Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV. Vorontsov IE, et al. Among authors: medvedeva ya. Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077. Nucleic Acids Res. 2024. PMID: 37971293 Free PMC article.
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Kulakovskiy IV, Vorontsov IE, Yevshin IS, Sharipov RN, Fedorova AD, Rumynskiy EI, Medvedeva YA, Magana-Mora A, Bajic VB, Papatsenko DA, Kolpakov FA, Makeev VJ. Kulakovskiy IV, et al. Among authors: medvedeva ya. Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259. doi: 10.1093/nar/gkx1106. Nucleic Acids Res. 2018. PMID: 29140464 Free PMC article.
EpiFactors: a comprehensive database of human epigenetic factors and complexes.
Medvedeva YA, Lennartsson A, Ehsani R, Kulakovskiy IV, Vorontsov IE, Panahandeh P, Khimulya G, Kasukawa T; FANTOM Consortium; Drabløs F. Medvedeva YA, et al. Database (Oxford). 2015 Jul 7;2015:bav067. doi: 10.1093/database/bav067. Print 2015. Database (Oxford). 2015. PMID: 26153137 Free PMC article.
CpG traffic lights are markers of regulatory regions in human genome.
Lioznova AV, Khamis AM, Artemov AV, Besedina E, Ramensky V, Bajic VB, Kulakovskiy IV, Medvedeva YA. Lioznova AV, et al. Among authors: medvedeva ya. BMC Genomics. 2019 Feb 1;20(1):102. doi: 10.1186/s12864-018-5387-1. BMC Genomics. 2019. PMID: 30709331 Free PMC article.
58 results