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American Gut: an Open Platform for Citizen Science Microbiome Research.
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R. McDonald D, et al. mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29795809 Free PMC article.
Forensic identification using skin bacterial communities.
Fierer N, Lauber CL, Zhou N, McDonald D, Costello EK, Knight R. Fierer N, et al. Among authors: mcdonald d. Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6477-81. doi: 10.1073/pnas.1000162107. Epub 2010 Mar 15. Proc Natl Acad Sci U S A. 2010. PMID: 20231444 Free PMC article.
Boulder ALignment Editor (ALE): a web-based RNA alignment tool.
Stombaugh J, Widmann J, McDonald D, Knight R. Stombaugh J, et al. Among authors: mcdonald d. Bioinformatics. 2011 Jun 15;27(12):1706-7. doi: 10.1093/bioinformatics/btr258. Epub 2011 May 5. Bioinformatics. 2011. PMID: 21546392 Free PMC article.
A framework for human microbiome research.
Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.
Harris JK, Caporaso JG, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D, Marshall P, Tufo H, Knight R, Pace NR. Harris JK, et al. Among authors: mcdonald d. ISME J. 2013 Jan;7(1):50-60. doi: 10.1038/ismej.2012.79. Epub 2012 Jul 26. ISME J. 2013. PMID: 22832344 Free PMC article.
Collaborative cloud-enabled tools allow rapid, reproducible biological insights.
Ragan-Kelley B, Walters WA, McDonald D, Riley J, Granger BE, Gonzalez A, Knight R, Perez F, Caporaso JG. Ragan-Kelley B, et al. Among authors: mcdonald d. ISME J. 2013 Mar;7(3):461-4. doi: 10.1038/ismej.2012.123. Epub 2012 Oct 25. ISME J. 2013. PMID: 23096404 Free PMC article. No abstract available.
1,661 results