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A community resource for paired genomic and metabolomic data mining.
Nat Chem Biol. 2021 Apr;17(4):363-368. doi: 10.1038/s41589-020-00724-z.
Nat Chem Biol. 2021.
PMID: 33589842
Free PMC article.
Molecular networking-based strategies in mass spectrometry coupled with in silico dereplication of peptidic natural products and gene cluster analysis.
McAvoy AC, Garg N.
McAvoy AC, et al.
Methods Enzymol. 2022;663:273-302. doi: 10.1016/bs.mie.2021.09.012. Epub 2021 Oct 16.
Methods Enzymol. 2022.
PMID: 35168793
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Discovery of Homogentisic Acid as a Precursor in Trimethoprim Metabolism and Natural Product Biosynthesis.
McAvoy AC, Threatt PH, Kapcia J 3rd, Garg N.
McAvoy AC, et al.
ACS Chem Biol. 2023 Apr 21;18(4):711-723. doi: 10.1021/acschembio.2c00529. Epub 2022 Oct 10.
ACS Chem Biol. 2023.
PMID: 36215670
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Metabolomic profiling of Burkholderia cenocepacia in synthetic cystic fibrosis sputum medium reveals nutrient environment-specific production of virulence factors.
Jaiyesimi OA, McAvoy AC, Fogg DN, Garg N.
Jaiyesimi OA, et al. Among authors: mcavoy ac.
Sci Rep. 2021 Nov 1;11(1):21419. doi: 10.1038/s41598-021-00421-4.
Sci Rep. 2021.
PMID: 34725378
Free PMC article.
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Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.
Melnik AV, Vázquez-Baeza Y, Aksenov AA, Hyde E, McAvoy AC, Wang M, da Silva RR, Protsyuk I, Wu JV, Bouslimani A, Lim YW, Luzzatto-Knaan T, Comstock W, Quinn RA, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC, Garg N.
Melnik AV, et al. Among authors: mcavoy ac.
mSystems. 2019 Sep 24;4(5):e00375-19. doi: 10.1128/mSystems.00375-19.
mSystems. 2019.
PMID: 31551401
Free PMC article.
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Differences in Cystic Fibrosis-Associated Burkholderia spp. Bacteria Metabolomes after Exposure to the Antibiotic Trimethoprim.
McAvoy AC, Jaiyesimi O, Threatt PH, Seladi T, Goldberg JB, da Silva RR, Garg N.
McAvoy AC, et al.
ACS Infect Dis. 2020 May 8;6(5):1154-1168. doi: 10.1021/acsinfecdis.9b00513. Epub 2020 Apr 1.
ACS Infect Dis. 2020.
PMID: 32212725
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Immunogenicity and Efficacy of a Novel Multi-Antigenic Peptide Vaccine Based on Cross-Reactivity between Feline and Human Immunodeficiency Viruses.
Sahay B, Aranyos AM, Mishra M, McAvoy AC, Martin MM, Pu R, Shiomitsu S, Shiomitsu K, Dark MJ, Sanou MP, Roff SR, Rathore MH, Yamamoto JK.
Sahay B, et al. Among authors: mcavoy ac.
Viruses. 2019 Feb 3;11(2):136. doi: 10.3390/v11020136.
Viruses. 2019.
PMID: 30717485
Free PMC article.
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HIV Maintains an Evolving and Dispersed Population in Multiple Tissues during Suppressive Combined Antiretroviral Therapy in Individuals with Cancer.
Rose R, Lamers SL, Nolan DJ, Maidji E, Faria NR, Pybus OG, Dollar JJ, Maruniak SA, McAvoy AC, Salemi M, Stoddart CA, Singer EJ, McGrath MS.
Rose R, et al. Among authors: mcavoy ac.
J Virol. 2016 Sep 29;90(20):8984-93. doi: 10.1128/JVI.00684-16. Print 2016 Oct 15.
J Virol. 2016.
PMID: 27466425
Free PMC article.
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