Marti-Renom MA - Search Results

1

Three-Dimensional Genomic Structure and Cohesin Occupancy Correlate with Transcriptional Activity during Spermatogenesis.

Vara C, Paytuví-Gallart A, Cuartero Y, Le Dily F, Garcia F, Salvà-Castro J, Gómez-H L, Julià E, Moutinho C, Aiese Cigliano R, Sanseverino W, Fornas O, Pendás AM, Heyn H, Waters PD, Marti-Renom MA, Ruiz-Herrera A. Vara C, et al. Cell Rep. 2019 Jul 9;28(2):352-367.e9. doi: 10.1016/j.celrep.2019.06.037. Cell Rep. 2019. PMID: 31291573 Free PMC article.

2

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation.

Le Dily F, Baù D, Pohl A, Vicent GP, Serra F, Soronellas D, Castellano G, Wright RH, Ballare C, Filion G, Marti-Renom MA, Beato M. Le Dily F, et al. Genes Dev. 2014 Oct 1;28(19):2151-62. doi: 10.1101/gad.241422.114. Genes Dev. 2014. PMID: 25274727 Free PMC article.

3

Restraint-based three-dimensional modeling of genomes and genomic domains.

Serra F, Di Stefano M, Spill YG, Cuartero Y, Goodstadt M, Baù D, Marti-Renom MA. Serra F, et al. FEBS Lett. 2015 Oct 7;589(20 Pt A):2987-95. doi: 10.1016/j.febslet.2015.05.012. Epub 2015 May 14. FEBS Lett. 2015. PMID: 25980604 Free article. Review.

4

On the demultiplexing of chromosome capture conformation data.

Junier I, Spill YG, Marti-Renom MA, Beato M, le Dily F. Junier I, et al. FEBS Lett. 2015 Oct 7;589(20 Pt A):3005-13. doi: 10.1016/j.febslet.2015.05.049. Epub 2015 Jun 6. FEBS Lett. 2015. PMID: 26054977 Free article. Review.

5

Challenges for visualizing three-dimensional data in genomic browsers.

Goodstadt M, Marti-Renom MA. Goodstadt M, et al. FEBS Lett. 2017 Sep;591(17):2505-2519. doi: 10.1002/1873-3468.12778. Epub 2017 Aug 24. FEBS Lett. 2017. PMID: 28771695 Free PMC article. Review.

6

Parallel sequencing lives, or what makes large sequencing projects successful.

Quilez J, Vidal E, Dily FL, Serra F, Cuartero Y, Stadhouders R, Graf T, Marti-Renom MA, Beato M, Filion G. Quilez J, et al. Gigascience. 2017 Nov 1;6(11):1-6. doi: 10.1093/gigascience/gix100. Gigascience. 2017. PMID: 29048533 Free PMC article.

7

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.

Stadhouders R, Vidal E, Serra F, Di Stefano B, Le Dily F, Quilez J, Gomez A, Collombet S, Berenguer C, Cuartero Y, Hecht J, Filion GJ, Beato M, Marti-Renom MA, Graf T. Stadhouders R, et al. Nat Genet. 2018 Feb;50(2):238-249. doi: 10.1038/s41588-017-0030-7. Epub 2018 Jan 15. Nat Genet. 2018. PMID: 29335546 Free PMC article.

8

OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes.

Vidal E, le Dily F, Quilez J, Stadhouders R, Cuartero Y, Graf T, Marti-Renom MA, Beato M, Filion GJ. Vidal E, et al. Nucleic Acids Res. 2018 May 4;46(8):e49. doi: 10.1093/nar/gky064. Nucleic Acids Res. 2018. PMID: 29394371 Free PMC article.

9

Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization.

Kojic A, Cuadrado A, De Koninck M, Giménez-Llorente D, Rodríguez-Corsino M, Gómez-López G, Le Dily F, Marti-Renom MA, Losada A. Kojic A, et al. Nat Struct Mol Biol. 2018 Jun;25(6):496-504. doi: 10.1038/s41594-018-0070-4. Epub 2018 Jun 4. Nat Struct Mol Biol. 2018. PMID: 29867216 Free PMC article.

10

Lamin B1 mapping reveals the existence of dynamic and functional euchromatin lamin B1 domains.

Pascual-Reguant L, Blanco E, Galan S, Le Dily F, Cuartero Y, Serra-Bardenys G, Di Carlo V, Iturbide A, Cebrià-Costa JP, Nonell L, de Herreros AG, Di Croce L, Marti-Renom MA, Peiró S. Pascual-Reguant L, et al. Nat Commun. 2018 Aug 24;9(1):3420. doi: 10.1038/s41467-018-05912-z. Nat Commun. 2018. PMID: 30143639 Free PMC article.

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