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A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories.
Placido D, Yuan B, Hjaltelin JX, Zheng C, Haue AD, Chmura PJ, Yuan C, Kim J, Umeton R, Antell G, Chowdhury A, Franz A, Brais L, Andrews E, Marks DS, Regev A, Ayandeh S, Brophy MT, Do NV, Kraft P, Wolpin BM, Rosenthal MH, Fillmore NR, Brunak S, Sander C. Placido D, et al. Among authors: marks ds. Nat Med. 2023 May;29(5):1113-1122. doi: 10.1038/s41591-023-02332-5. Epub 2023 May 8. Nat Med. 2023. PMID: 37156936 Free PMC article.
Prediction of human microRNA targets.
John B, Sander C, Marks DS. John B, et al. Among authors: marks ds. Methods Mol Biol. 2006;342:101-13. doi: 10.1385/1-59745-123-1:101. Methods Mol Biol. 2006. PMID: 16957370 Review.
PconsFold: improved contact predictions improve protein models.
Michel M, Hayat S, Skwark MJ, Sander C, Marks DS, Elofsson A. Michel M, et al. Among authors: marks ds. Bioinformatics. 2014 Sep 1;30(17):i482-8. doi: 10.1093/bioinformatics/btu458. Bioinformatics. 2014. PMID: 25161237 Free PMC article.
Pathway and network analysis of cancer genomes.
Creixell P, Reimand J, Haider S, Wu G, Shibata T, Vazquez M, Mustonen V, Gonzalez-Perez A, Pearson J, Sander C, Raphael BJ, Marks DS, Ouellette BFF, Valencia A, Bader GD, Boutros PC, Stuart JM, Linding R, Lopez-Bigas N, Stein LD; Mutation Consequences and Pathway Analysis Working Group of the International Cancer Genome Consortium. Creixell P, et al. Among authors: marks ds. Nat Methods. 2015 Jul;12(7):615-621. doi: 10.1038/nmeth.3440. Nat Methods. 2015. PMID: 26125594 Free PMC article.
163 results