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Chromatin gene-gene loops support the cross-regulation of genes with related function.
Pollex T, Marco-Ferreres R, Ciglar L, Ghavi-Helm Y, Rabinowitz A, Viales RR, Schaub C, Jankowski A, Girardot C, Furlong EEM. Pollex T, et al. Among authors: marco ferreres r. Mol Cell. 2024 Mar 7;84(5):822-838.e8. doi: 10.1016/j.molcel.2023.12.023. Epub 2023 Dec 28. Mol Cell. 2024. PMID: 38157845 Free article.
Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis.
Reddington JP, Garfield DA, Sigalova OM, Karabacak Calviello A, Marco-Ferreres R, Girardot C, Viales RR, Degner JF, Ohler U, Furlong EEM. Reddington JP, et al. Among authors: marco ferreres r. Dev Cell. 2020 Dec 7;55(5):648-664.e9. doi: 10.1016/j.devcel.2020.10.009. Epub 2020 Nov 9. Dev Cell. 2020. PMID: 33171098 Free article.
The cis-regulatory dynamics of embryonic development at single-cell resolution.
Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. Cusanovich DA, et al. Among authors: marco ferreres r. Nature. 2018 Mar 22;555(7697):538-542. doi: 10.1038/nature25981. Epub 2018 Mar 14. Nature. 2018. PMID: 29539636 Free PMC article.
Genetic variants regulating expression levels and isoform diversity during embryogenesis.
Cannavò E, Koelling N, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E, Furlong EE. Cannavò E, et al. Among authors: marco ferreres r. Nature. 2017 Jan 19;541(7637):402-406. doi: 10.1038/nature20802. Epub 2016 Dec 26. Nature. 2017. PMID: 28024300
A trans-Regulatory Code for the Forebrain Expression of Six3.2 in the Medaka Fish.
Beccari L, Marco-Ferreres R, Tabanera N, Manfredi A, Souren M, Wittbrodt B, Conte I, Wittbrodt J, Bovolenta P. Beccari L, et al. Among authors: marco ferreres r. J Biol Chem. 2015 Nov 6;290(45):26927-26942. doi: 10.1074/jbc.M115.681254. Epub 2015 Sep 16. J Biol Chem. 2015. PMID: 26378230 Free PMC article.
The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance.
Conte I, Merella S, Garcia-Manteiga JM, Migliore C, Lazarevic D, Carrella S, Marco-Ferreres R, Avellino R, Davidson NP, Emmett W, Sanges R, Bockett N, Van Heel D, Meroni G, Bovolenta P, Stupka E, Banfi S. Conte I, et al. Among authors: marco ferreres r. Nucleic Acids Res. 2014 Jul;42(12):7793-806. doi: 10.1093/nar/gku498. Epub 2014 Jun 3. Nucleic Acids Res. 2014. PMID: 24895435 Free PMC article.
18 results