Mandell DJ - Search Results

1

EGFR-Binding Peptides: From Computational Design towards Tumor-Targeting of Adeno-Associated Virus Capsids.

Feiner RC, Kemker I, Krutzke L, Allmendinger E, Mandell DJ, Sewald N, Kochanek S, Müller KM. Feiner RC, et al. Among authors: mandell dj. Int J Mol Sci. 2020 Dec 15;21(24):9535. doi: 10.3390/ijms21249535. Int J Mol Sci. 2020. PMID: 33333826 Free PMC article.

2

Computational design of a modular protein sense-response system.

Glasgow AA, Huang YM, Mandell DJ, Thompson M, Ritterson R, Loshbaugh AL, Pellegrino J, Krivacic C, Pache RA, Barlow KA, Ollikainen N, Jeon D, Kelly MJS, Fraser JS, Kortemme T. Glasgow AA, et al. Among authors: mandell dj. Science. 2019 Nov 22;366(6468):1024-1028. doi: 10.1126/science.aax8780. Science. 2019. PMID: 31754004 Free PMC article.

3

Backbone flexibility in computational protein design.

Mandell DJ, Kortemme T. Mandell DJ, et al. Curr Opin Biotechnol. 2009 Aug;20(4):420-8. doi: 10.1016/j.copbio.2009.07.006. Epub 2009 Aug 24. Curr Opin Biotechnol. 2009. PMID: 19709874 Review.

4

Computer-aided design of functional protein interactions.

Mandell DJ, Kortemme T. Mandell DJ, et al. Nat Chem Biol. 2009 Nov;5(11):797-807. doi: 10.1038/nchembio.251. Nat Chem Biol. 2009. PMID: 19841629 Review.

5

Assessment of flexible backbone protein design methods for sequence library prediction in the therapeutic antibody Herceptin-HER2 interface.

Babor M, Mandell DJ, Kortemme T. Babor M, et al. Among authors: mandell dj. Protein Sci. 2011 Jun;20(6):1082-9. doi: 10.1002/pro.632. Epub 2011 May 3. Protein Sci. 2011. PMID: 21465611 Free PMC article.

6

Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling.

Mandell DJ, Coutsias EA, Kortemme T. Mandell DJ, et al. Nat Methods. 2009 Aug;6(8):551-2. doi: 10.1038/nmeth0809-551. Nat Methods. 2009. PMID: 19644455 Free PMC article. No abstract available.

7

A mechanism for tunable autoinhibition in the structure of a human Ca2+/calmodulin- dependent kinase II holoenzyme.

Chao LH, Stratton MM, Lee IH, Rosenberg OS, Levitz J, Mandell DJ, Kortemme T, Groves JT, Schulman H, Kuriyan J. Chao LH, et al. Among authors: mandell dj. Cell. 2011 Sep 2;146(5):732-45. doi: 10.1016/j.cell.2011.07.038. Cell. 2011. PMID: 21884935 Free PMC article.

8

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.

Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, Ban YE, Fleishman SJ, Corn JE, Kim DE, Lyskov S, Berrondo M, Mentzer S, Popović Z, Havranek JJ, Karanicolas J, Das R, Meiler J, Kortemme T, Gray JJ, Kuhlman B, Baker D, Bradley P. Leaver-Fay A, et al. Among authors: mandell dj. Methods Enzymol. 2011;487:545-74. doi: 10.1016/B978-0-12-381270-4.00019-6. Methods Enzymol. 2011. PMID: 21187238 Free PMC article.

9

Strengths of hydrogen bonds involving phosphorylated amino acid side chains.

Mandell DJ, Chorny I, Groban ES, Wong SE, Levine E, Rapp CS, Jacobson MP. Mandell DJ, et al. J Am Chem Soc. 2007 Jan 31;129(4):820-7. doi: 10.1021/ja063019w. J Am Chem Soc. 2007. PMID: 17243818

10

Biocontainment of genetically modified organisms by synthetic protein design.

Mandell DJ, Lajoie MJ, Mee MT, Takeuchi R, Kuznetsov G, Norville JE, Gregg CJ, Stoddard BL, Church GM. Mandell DJ, et al. Nature. 2015 Feb 5;518(7537):55-60. doi: 10.1038/nature14121. Epub 2015 Jan 21. Nature. 2015. PMID: 25607366 Free PMC article.

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