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Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.
Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ. Muñoz-Amatriaín M, et al. Among authors: ma y. Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21. Plant J. 2015. PMID: 26252423 Free PMC article.
Combinatorial pooling enables selective sequencing of the barley gene space.
Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Bhat PR, Wu Y, Ciardo G, Alsaihati B, Ma Y, Wanamaker S, Resnik J, Bozdag S, Luo MC, Close TJ. Lonardi S, et al. Among authors: ma y. PLoS Comput Biol. 2013 Apr;9(4):e1003010. doi: 10.1371/journal.pcbi.1003010. Epub 2013 Apr 4. PLoS Comput Biol. 2013. PMID: 23592960 Free PMC article.
Genome resources for climate-resilient cowpea, an essential crop for food security.
Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ. Muñoz-Amatriaín M, et al. Among authors: ma y. Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3. Plant J. 2017. PMID: 27775877 Free article.
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.
Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J. Luo MC, et al. Among authors: ma y. Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22. Proc Natl Acad Sci U S A. 2013. PMID: 23610408 Free PMC article.
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences.
Huo N, Lazo GR, Vogel JP, You FM, Ma Y, Hayden DM, Coleman-Derr D, Hill TA, Dvorak J, Anderson OD, Luo MC, Gu YQ. Huo N, et al. Among authors: ma y. Funct Integr Genomics. 2008 May;8(2):135-47. doi: 10.1007/s10142-007-0062-7. Epub 2007 Nov 6. Funct Integr Genomics. 2008. PMID: 17985162
BAC libraries from wheat chromosome 7D: efficient tool for positional cloning of aphid resistance genes.
Simková H, Safář J, Kubaláková M, Suchánková P, Cíhalíková J, Robert-Quatre H, Azhaguvel P, Weng Y, Peng J, Lapitan NL, Ma Y, You FM, Luo MC, Bartoš J, Doležel J. Simková H, et al. Among authors: ma y. J Biomed Biotechnol. 2011;2011:302543. doi: 10.1155/2011/302543. Epub 2010 Dec 23. J Biomed Biotechnol. 2011. PMID: 21318113 Free PMC article.
Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat.
Akhunov ED, Sehgal S, Liang H, Wang S, Akhunova AR, Kaur G, Li W, Forrest KL, See D, Simková H, Ma Y, Hayden MJ, Luo M, Faris JD, Dolezel J, Gill BS. Akhunov ED, et al. Among authors: ma y. Plant Physiol. 2013 Jan;161(1):252-65. doi: 10.1104/pp.112.205161. Epub 2012 Nov 1. Plant Physiol. 2013. PMID: 23124323 Free PMC article.
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