Lopez F - Search Results

1

Bromodomain-dependent stage-specific male genome programming by Brdt.

Gaucher J, Boussouar F, Montellier E, Curtet S, Buchou T, Bertrand S, Hery P, Jounier S, Depaux A, Vitte AL, Guardiola P, Pernet K, Debernardi A, Lopez F, Holota H, Imbert J, Wolgemuth DJ, Gérard M, Rousseaux S, Khochbin S. Gaucher J, et al. Among authors: lopez f. EMBO J. 2012 Oct 3;31(19):3809-20. doi: 10.1038/emboj.2012.233. Epub 2012 Aug 24. EMBO J. 2012. PMID: 22922464 Free PMC article.

2

Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B.

Montellier E, Boussouar F, Rousseaux S, Zhang K, Buchou T, Fenaille F, Shiota H, Debernardi A, Héry P, Curtet S, Jamshidikia M, Barral S, Holota H, Bergon A, Lopez F, Guardiola P, Pernet K, Imbert J, Petosa C, Tan M, Zhao Y, Gérard M, Khochbin S. Montellier E, et al. Among authors: lopez f. Genes Dev. 2013 Aug 1;27(15):1680-92. doi: 10.1101/gad.220095.113. Epub 2013 Jul 24. Genes Dev. 2013. PMID: 23884607 Free PMC article.

3

Histone acetyltransferase cofactor Trrap maintains self-renewal and restricts differentiation of embryonic stem cells.

Sawan C, Hernandez-Vargas H, Murr R, Lopez F, Vaissière T, Ghantous AY, Cuenin C, Imbert J, Wang ZQ, Ren B, Herceg Z. Sawan C, et al. Among authors: lopez f. Stem Cells. 2013 May;31(5):979-91. doi: 10.1002/stem.1341. Stem Cells. 2013. PMID: 23362228

4

TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Lepoivre C, Bergon A, Lopez F, Perumal NB, Nguyen C, Imbert J, Puthier D. Lepoivre C, et al. Among authors: lopez f. BMC Bioinformatics. 2012 Jan 31;13:19. doi: 10.1186/1471-2105-13-19. BMC Bioinformatics. 2012. PMID: 22292669 Free PMC article.

5

A Positive Feed-forward Loop Associating EGR1 and PDGFA Promotes Proliferation and Self-renewal in Glioblastoma Stem Cells.

Sakakini N, Turchi L, Bergon A, Holota H, Rekima S, Lopez F, Paquis P, Almairac F, Fontaine D, Baeza-Kallee N, Van Obberghen-Schilling E, Junier MP, Chneiweiss H, Figarella-Branger D, Burel-Vandenbos F, Imbert J, Virolle T. Sakakini N, et al. Among authors: lopez f. J Biol Chem. 2016 May 13;291(20):10684-99. doi: 10.1074/jbc.M116.720698. Epub 2016 Mar 21. J Biol Chem. 2016. PMID: 27002148 Free PMC article.

6

TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database.

Lopez F, Textoris J, Bergon A, Didier G, Remy E, Granjeaud S, Imbert J, Nguyen C, Puthier D. Lopez F, et al. PLoS One. 2008;3(12):e4001. doi: 10.1371/journal.pone.0004001. Epub 2008 Dec 23. PLoS One. 2008. PMID: 19104654 Free PMC article.

7

ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.

Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez F, Ballester B. Chèneby J, et al. Among authors: lopez f. Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188. doi: 10.1093/nar/gkz945. Nucleic Acids Res. 2020. PMID: 31665499 Free PMC article.

8

Logical modelling of regulatory networks with GINsim 2.3.

Naldi A, Berenguier D, Fauré A, Lopez F, Thieffry D, Chaouiya C. Naldi A, et al. Among authors: lopez f. Biosystems. 2009 Aug;97(2):134-9. doi: 10.1016/j.biosystems.2009.04.008. Epub 2009 May 6. Biosystems. 2009. PMID: 19426782

9

ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments.

Hammal F, de Langen P, Bergon A, Lopez F, Ballester B. Hammal F, et al. Among authors: lopez f. Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325. doi: 10.1093/nar/gkab996. Nucleic Acids Res. 2022. PMID: 34751401 Free PMC article.

10

Differential repression of alternative transcripts: a screen for miRNA targets.

Legendre M, Ritchie W, Lopez F, Gautheret D. Legendre M, et al. Among authors: lopez f. PLoS Comput Biol. 2006 May;2(5):e43. doi: 10.1371/journal.pcbi.0020043. Epub 2006 May 12. PLoS Comput Biol. 2006. PMID: 16699595 Free PMC article.

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