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A statistical physics approach for disease module detection.
Wang XW, Qiao D, Cho MH, DeMeo DL, Silverman EK, Liu YY. Wang XW, et al. Among authors: liu yy. Genome Res. 2022 Oct;32(10):1918-1929. doi: 10.1101/gr.276690.122. Epub 2022 Oct 11. Genome Res. 2022. PMID: 36220609 Free PMC article.
Beyond GWAS in COPD: probing the landscape between gene-set associations, genome-wide associations and protein-protein interaction networks.
McDonald ML, Mattheisen M, Cho MH, Liu YY, Harshfield B, Hersh CP, Bakke P, Gulsvik A, Lange C, Beaty TH, Silverman EK; GenKOLS, COPDGene and ECLIPSE study investigators. McDonald ML, et al. Among authors: liu yy. Hum Hered. 2014;78(3-4):131-9. doi: 10.1159/000365589. Epub 2014 Aug 27. Hum Hered. 2014. PMID: 25171373 Free PMC article.
Control of fluxes in metabolic networks.
Basler G, Nikoloski Z, Larhlimi A, Barabási AL, Liu YY. Basler G, et al. Among authors: liu yy. Genome Res. 2016 Jul;26(7):956-68. doi: 10.1101/gr.202648.115. Epub 2016 May 19. Genome Res. 2016. PMID: 27197218 Free PMC article.
Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes.
Sharma A, Halu A, Decano JL, Padi M, Liu YY, Prasad RB, Fadista J, Santolini M, Menche J, Weiss ST, Vidal M, Silverman EK, Aikawa M, Barabási AL, Groop L, Loscalzo J. Sharma A, et al. Among authors: liu yy. NPJ Syst Biol Appl. 2018 Jul 3;4:25. doi: 10.1038/s41540-018-0057-0. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 29977601 Free PMC article.
Link Prediction through Deep Generative Model.
Wang XW, Chen Y, Liu YY. Wang XW, et al. Among authors: liu yy. iScience. 2020 Sep 28;23(10):101626. doi: 10.1016/j.isci.2020.101626. eCollection 2020 Oct 23. iScience. 2020. PMID: 33103070 Free PMC article.
Deciphering functional redundancy in the human microbiome.
Tian L, Wang XW, Wu AK, Fan Y, Friedman J, Dahlin A, Waldor MK, Weinstock GM, Weiss ST, Liu YY. Tian L, et al. Among authors: liu yy. Nat Commun. 2020 Dec 4;11(1):6217. doi: 10.1038/s41467-020-19940-1. Nat Commun. 2020. PMID: 33277504 Free PMC article.
2,790 results