Liu XS - Search Results

1

TIMER2.0 for analysis of tumor-infiltrating immune cells.

Li T, Fu J, Zeng Z, Cohen D, Li J, Chen Q, Li B, Liu XS. Li T, et al. Among authors: liu xs. Nucleic Acids Res. 2020 Jul 2;48(W1):W509-W514. doi: 10.1093/nar/gkaa407. Nucleic Acids Res. 2020. PMID: 32442275 Free PMC article.

2

Computational inference of mRNA stability from histone modification and transcriptome profiles.

Wang C, Tian R, Zhao Q, Xu H, Meyer CA, Li C, Zhang Y, Liu XS. Wang C, et al. Among authors: liu xs. Nucleic Acids Res. 2012 Aug;40(14):6414-23. doi: 10.1093/nar/gks304. Epub 2012 Apr 10. Nucleic Acids Res. 2012. PMID: 22495509 Free PMC article.

3

Target analysis by integration of transcriptome and ChIP-seq data with BETA.

Wang S, Sun H, Ma J, Zang C, Wang C, Wang J, Tang Q, Meyer CA, Zhang Y, Liu XS. Wang S, et al. Among authors: liu xs. Nat Protoc. 2013 Dec;8(12):2502-15. doi: 10.1038/nprot.2013.150. Epub 2013 Nov 21. Nat Protoc. 2013. PMID: 24263090 Free PMC article.

4

Network analysis of gene essentiality in functional genomics experiments.

Jiang P, Wang H, Li W, Zang C, Li B, Wong YJ, Meyer C, Liu JS, Aster JC, Liu XS. Jiang P, et al. Among authors: liu js, liu xs. Genome Biol. 2015 Oct 30;16:239. doi: 10.1186/s13059-015-0808-9. Genome Biol. 2015. PMID: 26518695 Free PMC article.

5

High-dimensional genomic data bias correction and data integration using MANCIE.

Zang C, Wang T, Deng K, Li B, Hu S, Qin Q, Xiao T, Zhang S, Meyer CA, He HH, Brown M, Liu JS, Xie Y, Liu XS. Zang C, et al. Among authors: liu js, liu xs. Nat Commun. 2016 Apr 13;7:11305. doi: 10.1038/ncomms11305. Nat Commun. 2016. PMID: 27072482 Free PMC article.

6

Landscape of tumor-infiltrating T cell repertoire of human cancers.

Li B, Li T, Pignon JC, Wang B, Wang J, Shukla SA, Dou R, Chen Q, Hodi FS, Choueiri TK, Wu C, Hacohen N, Signoretti S, Liu JS, Liu XS. Li B, et al. Among authors: liu js, liu xs. Nat Genet. 2016 Jul;48(7):725-32. doi: 10.1038/ng.3581. Epub 2016 May 30. Nat Genet. 2016. PMID: 27240091 Free PMC article.

7

Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.

Li B, Severson E, Pignon JC, Zhao H, Li T, Novak J, Jiang P, Shen H, Aster JC, Rodig S, Signoretti S, Liu JS, Liu XS. Li B, et al. Among authors: liu js, liu xs. Genome Biol. 2016 Aug 22;17(1):174. doi: 10.1186/s13059-016-1028-7. Genome Biol. 2016. PMID: 27549193 Free PMC article.

8

Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA-seq data.

Li B, Li T, Wang B, Dou R, Zhang J, Liu JS, Liu XS. Li B, et al. Among authors: liu js, liu xs. Nat Genet. 2017 Mar 30;49(4):482-483. doi: 10.1038/ng.3820. Nat Genet. 2017. PMID: 28358132 Free PMC article. No abstract available.

9

Revisit linear regression-based deconvolution methods for tumor gene expression data.

Li B, Liu JS, Liu XS. Li B, et al. Among authors: liu js, liu xs. Genome Biol. 2017 Jul 5;18(1):127. doi: 10.1186/s13059-017-1256-5. Genome Biol. 2017. PMID: 28679386 Free PMC article. No abstract available.

10

Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer.

Mei S, Meyer CA, Zheng R, Qin Q, Wu Q, Jiang P, Li B, Shi X, Wang B, Fan J, Shih C, Brown M, Zang C, Liu XS. Mei S, et al. Among authors: liu xs. Cancer Res. 2017 Nov 1;77(21):e19-e22. doi: 10.1158/0008-5472.CAN-17-0327. Cancer Res. 2017. PMID: 29092931 Free PMC article.

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