Lindorff-Larsen K - Search Results

1

Plant YTHDF proteins are direct effectors of antiviral immunity against an N6-methyladenosine-containing RNA virus.

Martínez-Pérez M, Aparicio F, Arribas-Hernández L, Tankmar MD, Rennie S, von Bülow S, Lindorff-Larsen K, Brodersen P, Pallas V. Martínez-Pérez M, et al. EMBO J. 2023 Sep 18;42(18):e113378. doi: 10.15252/embj.2022113378. Epub 2023 Jul 11. EMBO J. 2023. PMID: 37431920 Free PMC article.

2

Insights into the conservation and diversification of the molecular functions of YTHDF proteins.

Flores-Téllez D, Tankmar MD, von Bülow S, Chen J, Lindorff-Larsen K, Brodersen P, Arribas-Hernández L. Flores-Téllez D, et al. Among authors: lindorff larsen k. PLoS Genet. 2023 Oct 10;19(10):e1010980. doi: 10.1371/journal.pgen.1010980. eCollection 2023 Oct. PLoS Genet. 2023. PMID: 37816028 Free PMC article.

3

PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.

Boomsma W, Frellsen J, Harder T, Bottaro S, Johansson KE, Tian P, Stovgaard K, Andreetta C, Olsson S, Valentin JB, Antonov LD, Christensen AS, Borg M, Jensen JH, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T. Boomsma W, et al. J Comput Chem. 2013 Jul 15;34(19):1697-705. doi: 10.1002/jcc.23292. Epub 2013 Apr 26. J Comput Chem. 2013. PMID: 23619610

4

Improving Martini 3 for Disordered and Multidomain Proteins.

Thomasen FE, Pesce F, Roesgaard MA, Tesei G, Lindorff-Larsen K. Thomasen FE, et al. J Chem Theory Comput. 2022 Apr 12;18(4):2033-2041. doi: 10.1021/acs.jctc.1c01042. Epub 2022 Apr 4. J Chem Theory Comput. 2022. PMID: 35377637

5

Understanding single-pass transmembrane receptor signaling from a structural viewpoint-what are we missing?

Bugge K, Lindorff-Larsen K, Kragelund BB. Bugge K, et al. FEBS J. 2016 Dec;283(24):4424-4451. doi: 10.1111/febs.13793. Epub 2016 Jul 18. FEBS J. 2016. PMID: 27350538 Free article. Review.

6

Experimental parameterization of an energy function for the simulation of unfolded proteins.

Norgaard AB, Ferkinghoff-Borg J, Lindorff-Larsen K. Norgaard AB, et al. Biophys J. 2008 Jan 1;94(1):182-92. doi: 10.1529/biophysj.107.108241. Epub 2007 Sep 7. Biophys J. 2008. PMID: 17827232 Free PMC article.

7

A sticky cage can slow down folding.

Boomsma W, Lindorff-Larsen K. Boomsma W, et al. Biophys J. 2013 Mar 5;104(5):964-5. doi: 10.1016/j.bpj.2013.01.036. Biophys J. 2013. PMID: 23473477 Free PMC article. No abstract available.

8

Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity.

Neumann C, Rosenbaek LL, Flygaard RK, Habeck M, Karlsen JL, Wang Y, Lindorff-Larsen K, Gad HH, Hartmann R, Lyons JA, Fenton RA, Nissen P. Neumann C, et al. EMBO J. 2022 Dec 1;41(23):e110169. doi: 10.15252/embj.2021110169. Epub 2022 Oct 14. EMBO J. 2022. PMID: 36239040 Free PMC article.

9

Discovering functionally important sites in proteins.

Cagiada M, Bottaro S, Lindemose S, Schenstrøm SM, Stein A, Hartmann-Petersen R, Lindorff-Larsen K. Cagiada M, et al. Nat Commun. 2023 Jul 13;14(1):4175. doi: 10.1038/s41467-023-39909-0. Nat Commun. 2023. PMID: 37443362 Free PMC article.

10

Conformational ensembles of intrinsically disordered proteins and flexible multidomain proteins.

Thomasen FE, Lindorff-Larsen K. Thomasen FE, et al. Biochem Soc Trans. 2022 Feb 28;50(1):541-554. doi: 10.1042/BST20210499. Biochem Soc Trans. 2022. PMID: 35129612 Review.

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