Lin Y - Search Results

1

CiteFuse enables multi-modal analysis of CITE-seq data.

Kim HJ, Lin Y, Geddes TA, Yang JYH, Yang P. Kim HJ, et al. Among authors: lin y. Bioinformatics. 2020 Aug 15;36(14):4137-4143. doi: 10.1093/bioinformatics/btaa282. Bioinformatics. 2020. PMID: 32353146

2

Impact of similarity metrics on single-cell RNA-seq data clustering.

Kim T, Chen IR, Lin Y, Wang AY, Yang JYH, Yang P. Kim T, et al. Among authors: lin y. Brief Bioinform. 2019 Nov 27;20(6):2316-2326. doi: 10.1093/bib/bby076. Brief Bioinform. 2019. PMID: 30137247

3

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets.

Lin Y, Ghazanfar S, Wang KYX, Gagnon-Bartsch JA, Lo KK, Su X, Han ZG, Ormerod JT, Speed TP, Yang P, Yang JYH. Lin Y, et al. Proc Natl Acad Sci U S A. 2019 May 14;116(20):9775-9784. doi: 10.1073/pnas.1820006116. Epub 2019 Apr 26. Proc Natl Acad Sci U S A. 2019. PMID: 31028141 Free PMC article.

4

Evaluating stably expressed genes in single cells.

Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang JYH, Yang P. Lin Y, et al. Among authors: lin dm. Gigascience. 2019 Sep 1;8(9):giz106. doi: 10.1093/gigascience/giz106. Gigascience. 2019. PMID: 31531674 Free PMC article.

5

scDC: single cell differential composition analysis.

Cao Y, Lin Y, Ormerod JT, Yang P, Yang JYH, Lo KK. Cao Y, et al. Among authors: lin y. BMC Bioinformatics. 2019 Dec 24;20(Suppl 19):721. doi: 10.1186/s12859-019-3211-9. BMC Bioinformatics. 2019. PMID: 31870280 Free PMC article.

6

Mutational and transcriptomic landscapes of a rare human prostate basal cell carcinoma.

Su X, Long Q, Bo J, Shi Y, Zhao LN, Lin Y, Luo Q, Ghazanfar S, Zhang C, Liu Q, Wang L, He K, He J, Cui X, Yang JYH, Han ZG, Yang G, Sha JJ. Su X, et al. Among authors: lin y. Prostate. 2020 May;80(6):508-517. doi: 10.1002/pros.23965. Epub 2020 Mar 2. Prostate. 2020. PMID: 32119131

7

scClassify: sample size estimation and multiscale classification of cells using single and multiple reference.

Lin Y, Cao Y, Kim HJ, Salim A, Speed TP, Lin DM, Yang P, Yang JYH. Lin Y, et al. Among authors: lin dm. Mol Syst Biol. 2020 Jun;16(6):e9389. doi: 10.15252/msb.20199389. Mol Syst Biol. 2020. PMID: 32567229 Free PMC article.

8

Investigating higher-order interactions in single-cell data with scHOT.

Ghazanfar S, Lin Y, Su X, Lin DM, Patrick E, Han ZG, Marioni JC, Yang JYH. Ghazanfar S, et al. Among authors: lin y, lin dm. Nat Methods. 2020 Aug;17(8):799-806. doi: 10.1038/s41592-020-0885-x. Epub 2020 Jul 13. Nat Methods. 2020. PMID: 32661426 Free PMC article.

9

Clonal evolution in liver cancer at single-cell and single-variant resolution.

Su X, Zhao L, Shi Y, Zhang R, Long Q, Bai S, Luo Q, Lin Y, Zou X, Ghazanfar S, Tao K, Yang G, Wang L, He KY, Cui X, He J, Wu JX, Han B, Yan B, Deng B, Wang N, Li X, Yang P, Hou S, Sun J, Yang JYH, Chen J, Han ZG. Su X, et al. Among authors: lin y. J Hematol Oncol. 2021 Feb 2;14(1):22. doi: 10.1186/s13045-021-01036-y. J Hematol Oncol. 2021. PMID: 33531041 Free PMC article.

10

scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning.

Lin Y, Wu TY, Wan S, Yang JYH, Wong WH, Wang YXR. Lin Y, et al. Nat Biotechnol. 2022 May;40(5):703-710. doi: 10.1038/s41587-021-01161-6. Epub 2022 Jan 20. Nat Biotechnol. 2022. PMID: 35058621 Free PMC article.

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