Levy JJ - Search Results

1

Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.

Fatemi M, Feng E, Sharma C, Azher Z, Goel T, Ramwala O, Palisoul SM, Barney RE, Perreard L, Kolling FW, Salas LA, Christensen BC, Tsongalis GJ, Vaickus LJ, Levy JJ. Fatemi M, et al. Among authors: levy jj. J Pathol Inform. 2023 Mar 29;14:100308. doi: 10.1016/j.jpi.2023.100308. eCollection 2023. J Pathol Inform. 2023. PMID: 37114077 Free PMC article.

2

PyMethylProcess-convenient high-throughput preprocessing workflow for DNA methylation data.

Levy JJ, Titus AJ, Salas LA, Christensen BC. Levy JJ, et al. Bioinformatics. 2019 Dec 15;35(24):5379-5381. doi: 10.1093/bioinformatics/btz594. Bioinformatics. 2019. PMID: 31368477 Free PMC article.

3

PathFlowAI: A High-Throughput Workflow for Preprocessing, Deep Learning and Interpretation in Digital Pathology.

Levy JJ, Salas LA, Christensen BC, Sriharan A, Vaickus LJ. Levy JJ, et al. Pac Symp Biocomput. 2020;25:403-414. Pac Symp Biocomput. 2020. PMID: 31797614 Free PMC article.

4

MethylNet: an automated and modular deep learning approach for DNA methylation analysis.

Levy JJ, Titus AJ, Petersen CL, Chen Y, Salas LA, Christensen BC. Levy JJ, et al. BMC Bioinformatics. 2020 Mar 17;21(1):108. doi: 10.1186/s12859-020-3443-8. BMC Bioinformatics. 2020. PMID: 32183722 Free PMC article.

5

A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies.

Levy JJ, Azizgolshani N, Andersen MJ Jr, Suriawinata A, Liu X, Lisovsky M, Ren B, Bobak CA, Christensen BC, Vaickus LJ. Levy JJ, et al. Mod Pathol. 2021 Apr;34(4):808-822. doi: 10.1038/s41379-020-00718-1. Epub 2020 Dec 9. Mod Pathol. 2021. PMID: 33299110 Free PMC article.

6

Topological Feature Extraction and Visualization of Whole Slide Images using Graph Neural Networks.

Levy J, Haudenschild C, Barwick C, Christensen B, Vaickus L. Levy J, et al. Pac Symp Biocomput. 2021;26:285-296. Pac Symp Biocomput. 2021. PMID: 33691025 Free PMC article. Review.

7

Journey across epidemiology's third variables: an anesthesiologist's guide for successfully navigating confounding, mediation, and effect modification.

Levy J, Lebeaux R, Christensen B, Tosteson T, Bryan Y. Levy J, et al. Reg Anesth Pain Med. 2021 Nov;46(11):936-940. doi: 10.1136/rapm-2020-101984. Epub 2021 May 21. Reg Anesth Pain Med. 2021. PMID: 34021076

8

Atypia of undetermined significance in thyroid cytology: Nuclear atypia and architectural atypia are associated with different molecular alterations and risks of malignancy.

Glass RE, Levy JJ, Motanagh SA, Vaickus LJ, Liu X. Glass RE, et al. Among authors: levy jj. Cancer Cytopathol. 2021 Dec;129(12):966-972. doi: 10.1002/cncy.22495. Epub 2021 Aug 16. Cancer Cytopathol. 2021. PMID: 34399035 Free article.

9

MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks.

Levy JJ, Chen Y, Azizgolshani N, Petersen CL, Titus AJ, Moen EL, Vaickus LJ, Salas LA, Christensen BC. Levy JJ, et al. NPJ Syst Biol Appl. 2021 Aug 20;7(1):33. doi: 10.1038/s41540-021-00193-7. NPJ Syst Biol Appl. 2021. PMID: 34417465 Free PMC article.

10

DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker.

Azizgolshani N, Petersen CL, Chen Y, Levy JJ, Salas LA, Perreard L, Nguyen LN, Christensen BC. Azizgolshani N, et al. Among authors: levy jj. Clin Epigenetics. 2021 Sep 19;13(1):176. doi: 10.1186/s13148-021-01156-9. Clin Epigenetics. 2021. PMID: 34538273 Free PMC article.

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