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Page 1
Parasite hybridization promotes spreading of endosymbiotic viruses.
Heeren S, Maes I, Sanders M, Lye LF, Arevalo J, Llanos-Cuentas A, Garcia L, Lemey P, Beverley SM, Cotton JA, Dujardin JC, den Broeck FV. Heeren S, et al. Among authors: lemey p. bioRxiv [Preprint]. 2023 Mar 25:2023.03.24.534103. doi: 10.1101/2023.03.24.534103. bioRxiv. 2023. PMID: 36993291 Free PMC article. Preprint.
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins G, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Among authors: lemey p. bioRxiv [Preprint]. 2022 Jan 18:2022.01.14.476382. doi: 10.1101/2022.01.14.476382. bioRxiv. 2022. PMID: 35075456 Free PMC article. Updated. Preprint.
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2.
Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Robertson DL, Dellicour S, Worobey M, Wertheim JO, Lemey P. Pekar JE, et al. Among authors: lemey p. bioRxiv [Preprint]. 2023 Jul 12:2023.07.12.548617. doi: 10.1101/2023.07.12.548617. bioRxiv. 2023. PMID: 37502985 Free PMC article. Preprint.
Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic.
Crits-Christoph A, Levy JI, Pekar JE, Goldstein SA, Singh R, Hensel Z, Gangavarapu K, Rogers MB, Moshiri N, Garry RF, Holmes EC, Koopmans MPG, Lemey P, Popescu S, Rambaut A, Robertson DL, Suchard MA, Wertheim JO, Rasmussen AL, Andersen KG, Worobey M, Débarre F. Crits-Christoph A, et al. Among authors: lemey p. bioRxiv [Preprint]. 2023 Sep 14:2023.09.13.557637. doi: 10.1101/2023.09.13.557637. bioRxiv. 2023. PMID: 37745602 Free PMC article. Preprint.
The genetic diversity of Nipah virus across spatial scales.
Azuero OC, Lefrancq N, Nikolay B, McKee C, Cappelle J, Hul V, Ou TP, Hoem T, Lemey P, Rahman MZ, Islam A, Gurley ES, Duong V, Salje H. Azuero OC, et al. Among authors: lemey p. medRxiv [Preprint]. 2023 Oct 4:2023.07.14.23292668. doi: 10.1101/2023.07.14.23292668. medRxiv. 2023. PMID: 37502973 Free PMC article. Updated. Preprint.
Report 46: Factors driving extensive spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals.
Brizzi A, Whittaker C, Servo LMS, Hawryluk I, Prete CA Jr, de Souza WM, Aguiar RS, Araujo LJT, Bastos LS, Blenkinsop A, Buss LF, Candido D, Castro MC, Costa SF, Croda J, de Souza Santos AA, Dye C, Flaxman S, Fonseca PLC, Geddes VEV, Gutierrez B, Lemey P, Levin AS, Mellan T, Bonfim DM, Miscouridou X, Mishra S, Monod M, Moreira FRR, Nelson B, Pereira RHM, Ranzani O, Schnekenberg RP, Semenova E, Sonnabend R, Souza RP, Xi X, Sabino EC, Faria NR, Bhatt S, Ratmann O. Brizzi A, et al. Among authors: lemey p. medRxiv [Preprint]. 2021 Nov 2:2021.11.01.21265731. doi: 10.1101/2021.11.01.21265731. medRxiv. 2021. PMID: 34751273 Free PMC article. Updated. Preprint.
The genetic diversity of Nipah virus across spatial scales.
Cortes-Azuero O, Lefrancq N, Nikolay B, McKee C, Cappelle J, Hul V, Ou TP, Hoem T, Lemey P, Rahman MZ, Islam A, Gurley ES, Duong V, Salje H. Cortes-Azuero O, et al. Among authors: lemey p. J Infect Dis. 2024 Apr 29:jiae221. doi: 10.1093/infdis/jiae221. Online ahead of print. J Infect Dis. 2024. PMID: 38682164
How fast are viruses spreading in the wild?
Dellicour S, Bastide P, Rocu P, Fargette D, Hardy OJ, Suchard MA, Guindon S, Lemey P. Dellicour S, et al. Among authors: lemey p. bioRxiv [Preprint]. 2024 Apr 11:2024.04.10.588821. doi: 10.1101/2024.04.10.588821. bioRxiv. 2024. PMID: 38645268 Free PMC article. Preprint.
349 results