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A consensus protocol for functional connectivity analysis in the rat brain.
Grandjean J, Desrosiers-Gregoire G, Anckaerts C, Angeles-Valdez D, Ayad F, Barrière DA, Blockx I, Bortel A, Broadwater M, Cardoso BM, Célestine M, Chavez-Negrete JE, Choi S, Christiaen E, Clavijo P, Colon-Perez L, Cramer S, Daniele T, Dempsey E, Diao Y, Doelemeyer A, Dopfel D, Dvořáková L, Falfán-Melgoza C, Fernandes FF, Fowler CF, Fuentes-Ibañez A, Garin CM, Gelderman E, Golden CEM, Guo CCG, Henckens MJAG, Hennessy LA, Herman P, Hofwijks N, Horien C, Ionescu TM, Jones J, Kaesser J, Kim E, Lambers H, Lazari A, Lee SH, Lillywhite A, Liu Y, Liu YY, López-Castro A, López-Gil X, Ma Z, MacNicol E, Madularu D, Mandino F, Marciano S, McAuslan MJ, McCunn P, McIntosh A, Meng X, Meyer-Baese L, Missault S, Moro F, Naessens DMP, Nava-Gomez LJ, Nonaka H, Ortiz JJ, Paasonen J, Peeters LM, Pereira M, Perez PD, Pompilus M, Prior M, Rakhmatullin R, Reimann HM, Reinwald J, Del Rio RT, Rivera-Olvera A, Ruiz-Pérez D, Russo G, Rutten TJ, Ryoke R, Sack M, Salvan P, Sanganahalli BG, Schroeter A, Seewoo BJ, Selingue E, Seuwen A, Shi B, Sirmpilatze N, Smith JAB, Smith C, Sobczak F, Stenroos PJ, Straathof M, Strobelt S, Sumiyoshi A, Takahashi K, Torres-García ME, Tudela R, van den Berg M, van der Ma… See abstract for full author list ➔ Grandjean J, et al. Among authors: lee sh. Nat Neurosci. 2023 Apr;26(4):673-681. doi: 10.1038/s41593-023-01286-8. Epub 2023 Mar 27. Nat Neurosci. 2023. PMID: 36973511 Free PMC article.
Coordination of Brain-Wide Activity Dynamics by Dopaminergic Neurons.
Decot HK, Namboodiri VM, Gao W, McHenry JA, Jennings JH, Lee SH, Kantak PA, Jill Kao YC, Das M, Witten IB, Deisseroth K, Shih YI, Stuber GD. Decot HK, et al. Among authors: lee sh. Neuropsychopharmacology. 2017 Feb;42(3):615-627. doi: 10.1038/npp.2016.151. Epub 2016 Aug 12. Neuropsychopharmacology. 2017. PMID: 27515791 Free PMC article.
Automatic Skull Stripping of Rat and Mouse Brain MRI Data Using U-Net.
Hsu LM, Wang S, Ranadive P, Ban W, Chao TH, Song S, Cerri DH, Walton LR, Broadwater MA, Lee SH, Shen D, Shih YI. Hsu LM, et al. Among authors: lee sh. Front Neurosci. 2020 Oct 7;14:568614. doi: 10.3389/fnins.2020.568614. eCollection 2020. Front Neurosci. 2020. PMID: 33117118 Free PMC article.
An isotropic EPI database and analytical pipelines for rat brain resting-state fMRI.
Lee SH, Broadwater MA, Ban W, Wang TW, Kim HJ, Dumas JS, Vetreno RP, Herman MA, Morrow AL, Besheer J, Kash TL, Boettiger CA, Robinson DL, Crews FT, Shih YI. Lee SH, et al. Neuroimage. 2021 Nov;243:118541. doi: 10.1016/j.neuroimage.2021.118541. Epub 2021 Aug 31. Neuroimage. 2021. PMID: 34478824 Free PMC article.
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