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Data-independent acquisition mass spectrometry in severe rheumatic heart disease (RHD) identifies a proteomic signature showing ongoing inflammation and effectively classifying RHD cases.
Salie MT, Yang J, Ramírez Medina CR, Zühlke LJ, Chishala C, Ntsekhe M, Gitura B, Ogendo S, Okello E, Lwabi P, Musuku J, Mtaja A, Hugo-Hamman C, El-Sayed A, Damasceno A, Mocumbi A, Bode-Thomas F, Yilgwan C, Amusa GA, Nkereuwem E, Shaboodien G, Da Silva R, Lee DCH, Frain S, Geifman N, Whetton AD, Keavney B, Engel ME; RHDGen Network Consortium. Salie MT, et al. Among authors: lee dch. Clin Proteomics. 2022 Mar 22;19(1):7. doi: 10.1186/s12014-022-09345-1. Clin Proteomics. 2022. PMID: 35317720 Free PMC article.
The use of missing values in proteomic data-independent acquisition mass spectrometry to enable disease activity discrimination.
McGurk KA, Dagliati A, Chiasserini D, Lee D, Plant D, Baricevic-Jones I, Kelsall J, Eineman R, Reed R, Geary B, Unwin RD, Nicolaou A, Keavney BD, Barton A, Whetton AD, Geifman N. McGurk KA, et al. Among authors: lee d. Bioinformatics. 2020 Apr 1;36(7):2217-2223. doi: 10.1093/bioinformatics/btz898. Bioinformatics. 2020. PMID: 31790148 Free PMC article.
Design of High Affinity Binders to Convex Protein Target Sites.
Baker D, Yang W, Hicks DR, Ghosh A, Schwartze TA, Coventry B, Goreshnik I, Allen A, Halabiya S, Kim C, Hinck CS, Lee DS, Bera A, Li Z, Wang Y, Schlichthaerle T, Cao L, Huang B, Garrett S, Gerben SR, Rettie S, Heine P, Edman N, Murray AN, Carter LP, Stewart L, Almo S, Hinck AP. Baker D, et al. Among authors: lee ds. bioRxiv [Preprint]. 2024 May 2:2024.05.01.592114. doi: 10.1101/2024.05.01.592114. bioRxiv. 2024. PMID: 38746206 Free PMC article. Preprint.
Generation of allogeneic CAR-NKT cells from hematopoietic stem and progenitor cells using a clinically guided culture method.
Li YR, Zhou Y, Yu J, Kim YJ, Li M, Lee D, Zhou K, Chen Y, Zhu Y, Wang YC, Li Z, Yu Y, Dunn ZS, Guo W, Cen X, Husman T, Bajpai A, Kramer A, Wilson M, Fang Y, Huang J, Li S, Zhou Y, Zhang Y, Hahn Z, Zhu E, Ma F, Pan C, Lusis AJ, Zhou JJ, Seet CS, Kohn DB, Wang P, Zhou XJ, Pellegrini M, Puliafito BR, Larson SM, Yang L. Li YR, et al. Among authors: lee d. Nat Biotechnol. 2024 May 14. doi: 10.1038/s41587-024-02226-y. Online ahead of print. Nat Biotechnol. 2024. PMID: 38744947
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