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MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data.
Hüther P, Hagmann J, Nunn A, Kakoulidou I, Pisupati R, Langenberger D, Weigel D, Johannes F, Schultheiss SJ, Becker C. Hüther P, et al. Among authors: langenberger d. Quant Plant Biol. 2022 Sep 26;3:e19. doi: 10.1017/qpb.2022.14. eCollection 2022. Quant Plant Biol. 2022. PMID: 37077980 Free PMC article.
The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline.
Can SN, Nunn A, Galanti D, Langenberger D, Becker C, Volmer K, Heer K, Opgenoorth L, Fernandez-Pozo N, Rensing SA. Can SN, et al. Among authors: langenberger d. Epigenomes. 2021 May 4;5(2):12. doi: 10.3390/epigenomes5020012. Epigenomes. 2021. PMID: 34968299 Free PMC article.
Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates.
Nunn A, Rodríguez-Arévalo I, Tandukar Z, Frels K, Contreras-Garrido A, Carbonell-Bejerano P, Zhang P, Ramos Cruz D, Jandrasits K, Lanz C, Brusa A, Mirouze M, Dorn K, Galbraith DW, Jarvis BA, Sedbrook JC, Wyse DL, Otto C, Langenberger D, Stadler PF, Weigel D, Marks MD, Anderson JA, Becker C, Chopra R. Nunn A, et al. Among authors: langenberger d. Plant Biotechnol J. 2022 May;20(5):944-963. doi: 10.1111/pbi.13775. Epub 2022 Feb 6. Plant Biotechnol J. 2022. PMID: 34990041 Free PMC article.
Evidence for human microRNA-offset RNAs in small RNA sequencing data.
Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovich P, Stadler PF. Langenberger D, et al. Bioinformatics. 2009 Sep 15;25(18):2298-301. doi: 10.1093/bioinformatics/btp419. Epub 2009 Jul 6. Bioinformatics. 2009. PMID: 19584066
32 results