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Perspectives on automated composition of workflows in the life sciences.
Lamprecht AL, Palmblad M, Ison J, Schwämmle V, Al Manir MS, Altintas I, Baker CJO, Ben Hadj Amor A, Capella-Gutierrez S, Charonyktakis P, Crusoe MR, Gil Y, Goble C, Griffin TJ, Groth P, Ienasescu H, Jagtap P, Kalaš M, Kasalica V, Khanteymoori A, Kuhn T, Mei H, Ménager H, Möller S, Richardson RA, Robert V, Soiland-Reyes S, Stevens R, Szaniszlo S, Verberne S, Verhoeven A, Wolstencroft K. Lamprecht AL, et al. F1000Res. 2021 Sep 7;10:897. doi: 10.12688/f1000research.54159.1. eCollection 2021. F1000Res. 2021. PMID: 34804501 Free PMC article.
Community curation of bioinformatics software and data resources.
Ison J, Ménager H, Brancotte B, Jaaniso E, Salumets A, Raček T, Lamprecht AL, Palmblad M, Kalaš M, Chmura P, Hancock JM, Schwämmle V, Ienasescu HI. Ison J, et al. Among authors: lamprecht al. Brief Bioinform. 2020 Sep 25;21(5):1697-1705. doi: 10.1093/bib/bbz075. Brief Bioinform. 2020. PMID: 31624831 Free PMC article.
Loose programming of GIS workflows with geo-analytical concepts.
Kruiger JF, Kasalica V, Meerlo R, Lamprecht AL, Nyamsuren E, Scheider S. Kruiger JF, et al. Among authors: lamprecht al. Trans GIS. 2021 Feb;25(1):424-449. doi: 10.1111/tgis.12692. Epub 2020 Oct 26. Trans GIS. 2021. PMID: 33776542 Free PMC article.
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.
Lamprecht AL, Margaria T, Steffen B, Sczyrba A, Hartmeier S, Giegerich R. Lamprecht AL, et al. BMC Bioinformatics. 2008 Apr 25;9 Suppl 4(Suppl 4):S13. doi: 10.1186/1471-2105-9-S4-S13. BMC Bioinformatics. 2008. PMID: 18460174 Free PMC article.
Semantics-based composition of EMBOSS services.
Lamprecht AL, Naujokat S, Margaria T, Steffen B. Lamprecht AL, et al. J Biomed Semantics. 2011 Mar 7;2 Suppl 1(Suppl 1):S5. doi: 10.1186/2041-1480-2-S1-S5. J Biomed Semantics. 2011. PMID: 21388574 Free PMC article.
Flux-p: automating metabolic flux analysis.
Ebert BE, Lamprecht AL, Steffen B, Blank LM. Ebert BE, et al. Among authors: lamprecht al. Metabolites. 2012 Nov 12;2(4):872-90. doi: 10.3390/metabo2040872. Metabolites. 2012. PMID: 24957766 Free PMC article.
Introducing the FAIR Principles for research software.
Barker M, Chue Hong NP, Katz DS, Lamprecht AL, Martinez-Ortiz C, Psomopoulos F, Harrow J, Castro LJ, Gruenpeter M, Martinez PA, Honeyman T. Barker M, et al. Among authors: lamprecht al. Sci Data. 2022 Oct 14;9(1):622. doi: 10.1038/s41597-022-01710-x. Sci Data. 2022. PMID: 36241754 Free PMC article.
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