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Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment.
Marcos-Zambrano LJ, Karaduzovic-Hadziabdic K, Loncar Turukalo T, Przymus P, Trajkovik V, Aasmets O, Berland M, Gruca A, Hasic J, Hron K, Klammsteiner T, Kolev M, Lahti L, Lopes MB, Moreno V, Naskinova I, Org E, Paciência I, Papoutsoglou G, Shigdel R, Stres B, Vilne B, Yousef M, Zdravevski E, Tsamardinos I, Carrillo de Santa Pau E, Claesson MJ, Moreno-Indias I, Truu J. Marcos-Zambrano LJ, et al. Among authors: lahti l. Front Microbiol. 2021 Feb 19;12:634511. doi: 10.3389/fmicb.2021.634511. eCollection 2021. Front Microbiol. 2021. PMID: 33737920 Free PMC article. Review.
Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles.
Kaisanlahti A, Turunen J, Byts N, Samoylenko A, Bart G, Virtanen N, Tejesvi MV, Zhyvolozhnyi A, Sarfraz S, Kumpula S, Hekkala J, Salmi S, Will O, Korvala J, Paalanne N, Erawijantari PP, Suokas M, Medina TP, Vainio S, Medina OP, Lahti L, Tapiainen T, Reunanen J. Kaisanlahti A, et al. Among authors: lahti l. Microbiome. 2023 Nov 13;11(1):249. doi: 10.1186/s40168-023-01694-9. Microbiome. 2023. PMID: 37953319 Free PMC article.
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions.
Moreno-Indias I, Lahti L, Nedyalkova M, Elbere I, Roshchupkin G, Adilovic M, Aydemir O, Bakir-Gungor B, Santa Pau EC, D'Elia D, Desai MS, Falquet L, Gundogdu A, Hron K, Klammsteiner T, Lopes MB, Marcos-Zambrano LJ, Marques C, Mason M, May P, Pašić L, Pio G, Pongor S, Promponas VJ, Przymus P, Saez-Rodriguez J, Sampri A, Shigdel R, Stres B, Suharoschi R, Truu J, Truică CO, Vilne B, Vlachakis D, Yilmaz E, Zeller G, Zomer AL, Gómez-Cabrero D, Claesson MJ. Moreno-Indias I, et al. Among authors: lahti l. Front Microbiol. 2021 Feb 22;12:635781. doi: 10.3389/fmicb.2021.635781. eCollection 2021. Front Microbiol. 2021. PMID: 33692771 Free PMC article.
Modelling spatial patterns in host-associated microbial communities.
Ruuskanen MO, Sommeria-Klein G, Havulinna AS, Niiranen TJ, Lahti L. Ruuskanen MO, et al. Among authors: lahti l. Environ Microbiol. 2021 May;23(5):2374-2388. doi: 10.1111/1462-2920.15462. Epub 2021 Mar 24. Environ Microbiol. 2021. PMID: 33734553 Review.
Towards standardized and reproducible research in skin microbiomes.
Ruuskanen MO, Vats D, Potbhare R, RaviKumar A, Munukka E, Ashma R, Lahti L. Ruuskanen MO, et al. Among authors: lahti l. Environ Microbiol. 2022 Sep;24(9):3840-3860. doi: 10.1111/1462-2920.15945. Epub 2022 Mar 7. Environ Microbiol. 2022. PMID: 35229437 Free PMC article. Review.
Microbiome data science.
Shetty SA, Lahti L. Shetty SA, et al. Among authors: lahti l. J Biosci. 2019 Oct;44(5):115. J Biosci. 2019. PMID: 31719224 Free article. Review.
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting.
Liu Y, Méric G, Havulinna AS, Teo SM, Åberg F, Ruuskanen M, Sanders J, Zhu Q, Tripathi A, Verspoor K, Cheng S, Jain M, Jousilahti P, Vázquez-Baeza Y, Loomba R, Lahti L, Niiranen T, Salomaa V, Knight R, Inouye M. Liu Y, et al. Among authors: lahti l. Cell Metab. 2022 May 3;34(5):719-730.e4. doi: 10.1016/j.cmet.2022.03.002. Epub 2022 Mar 29. Cell Metab. 2022. PMID: 35354069 Free PMC article.
136 results