Laederach A - Search Results

1

Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA.

Gamache ER, Doh JH, Ritz J, Laederach A, Bellaousov S, Mathews DH, Curcio MJ. Gamache ER, et al. Among authors: laederach a. Viruses. 2017 Apr 26;9(5):93. doi: 10.3390/v9050093. Viruses. 2017. PMID: 28445416 Free PMC article.

2

Sharing and archiving nucleic acid structure mapping data.

Rocca-Serra P, Bellaousov S, Birmingham A, Chen C, Cordero P, Das R, Davis-Neulander L, Duncan CD, Halvorsen M, Knight R, Leontis NB, Mathews DH, Ritz J, Stombaugh J, Weeks KM, Zirbel CL, Laederach A. Rocca-Serra P, et al. Among authors: laederach a. RNA. 2011 Jul;17(7):1204-12. doi: 10.1261/rna.2753211. Epub 2011 May 24. RNA. 2011. PMID: 21610212 Free PMC article.

3

Structural effects of linkage disequilibrium on the transcriptome.

Martin JS, Halvorsen M, Davis-Neulander L, Ritz J, Gopinath C, Beauregard A, Laederach A. Martin JS, et al. Among authors: laederach a. RNA. 2012 Jan;18(1):77-87. doi: 10.1261/rna.029900.111. Epub 2011 Nov 22. RNA. 2012. PMID: 22109839 Free PMC article.

4

Evaluating our ability to predict the structural disruption of RNA by SNPs.

Ritz J, Martin JS, Laederach A. Ritz J, et al. Among authors: laederach a. BMC Genomics. 2012 Jun 18;13 Suppl 4(Suppl 4):S6. doi: 10.1186/1471-2164-13-S4-S6. BMC Genomics. 2012. PMID: 22759654 Free PMC article.

5

Evolutionary evidence for alternative structure in RNA sequence co-variation.

Ritz J, Martin JS, Laederach A. Ritz J, et al. Among authors: laederach a. PLoS Comput Biol. 2013;9(7):e1003152. doi: 10.1371/journal.pcbi.1003152. Epub 2013 Jul 25. PLoS Comput Biol. 2013. PMID: 23935473 Free PMC article.

6

Classification of RNA structure change by 'gazing' at experimental data.

Woods CT, Laederach A. Woods CT, et al. Among authors: laederach a. Bioinformatics. 2017 Jun 1;33(11):1647-1655. doi: 10.1093/bioinformatics/btx041. Bioinformatics. 2017. PMID: 28130241 Free PMC article.

7

Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing.

Kumar J, Lackey L, Waldern JM, Dey A, Mustoe AM, Weeks KM, Mathews DH, Laederach A. Kumar J, et al. Among authors: laederach a. Elife. 2022 Jun 13;11:e73888. doi: 10.7554/eLife.73888. Elife. 2022. PMID: 35695373 Free PMC article.

8

Disease-associated mutations that alter the RNA structural ensemble.

Halvorsen M, Martin JS, Broadaway S, Laederach A. Halvorsen M, et al. Among authors: laederach a. PLoS Genet. 2010 Aug 19;6(8):e1001074. doi: 10.1371/journal.pgen.1001074. PLoS Genet. 2010. PMID: 20808897 Free PMC article.

9

Rapid quantification and analysis of kinetic •OH radical footprinting data using SAFA.

Simmons K, Martin JS, Shcherbakova I, Laederach A. Simmons K, et al. Among authors: laederach a. Methods Enzymol. 2009;468:47-66. doi: 10.1016/S0076-6879(09)68003-4. Epub 2009 Nov 17. Methods Enzymol. 2009. PMID: 20946764 Free PMC article.

10

Molecular biology: A second layer of information in RNA.

Ramos SB, Laederach A. Ramos SB, et al. Among authors: laederach a. Nature. 2014 Jan 30;505(7485):621-2. doi: 10.1038/505621a. Nature. 2014. PMID: 24476882 Free PMC article.

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