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Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs.
Hadi K, Yao X, Behr JM, Deshpande A, Xanthopoulakis C, Tian H, Kudman S, Rosiene J, Darmofal M, DeRose J, Mortensen R, Adney EM, Shaiber A, Gajic Z, Sigouros M, Eng K, Wala JA, Wrzeszczyński KO, Arora K, Shah M, Emde AK, Felice V, Frank MO, Darnell RB, Ghandi M, Huang F, Dewhurst S, Maciejowski J, de Lange T, Setton J, Riaz N, Reis-Filho JS, Powell S, Knowles DA, Reznik E, Mishra B, Beroukhim R, Zody MC, Robine N, Oman KM, Sanchez CA, Kuhner MK, Smith LP, Galipeau PC, Paulson TG, Reid BJ, Li X, Wilkes D, Sboner A, Mosquera JM, Elemento O, Imielinski M. Hadi K, et al. Among authors: kuhner mk. Cell. 2020 Oct 1;183(1):197-210.e32. doi: 10.1016/j.cell.2020.08.006. Cell. 2020. PMID: 33007263 Free PMC article.
NSAID use and somatic exomic mutations in Barrett's esophagus.
Galipeau PC, Oman KM, Paulson TG, Sanchez CA, Zhang Q, Marty JA, Delrow JJ, Kuhner MK, Vaughan TL, Reid BJ, Li X. Galipeau PC, et al. Among authors: kuhner mk. Genome Med. 2018 Feb 27;10(1):17. doi: 10.1186/s13073-018-0520-y. Genome Med. 2018. PMID: 29486792 Free PMC article.
CNValidator: validating somatic copy-number inference.
Smith LP, Yamato JA, Kuhner MK. Smith LP, et al. Among authors: kuhner mk. Bioinformatics. 2019 Aug 1;35(15):2660-2662. doi: 10.1093/bioinformatics/bty1022. Bioinformatics. 2019. PMID: 30541069 Free PMC article.
Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression.
Paulson TG, Galipeau PC, Oman KM, Sanchez CA, Kuhner MK, Smith LP, Hadi K, Shah M, Arora K, Shelton J, Johnson M, Corvelo A, Maley CC, Yao X, Sanghvi R, Venturini E, Emde AK, Hubert B, Imielinski M, Robine N, Reid BJ, Li X. Paulson TG, et al. Among authors: kuhner mk. Nat Commun. 2022 Apr 28;13(1):2300. doi: 10.1038/s41467-022-29767-7. Nat Commun. 2022. PMID: 35484108 Free PMC article.
Correction to: NSAID use and somatic exomic mutations in Barrett's esophagus.
Galipeau PC, Oman KM, Paulson TG, Sanchez CA, Zhang Q, Marty JA, Delrow JJ, Kuhner MK, Vaughan TL, Reid BJ, Li X. Galipeau PC, et al. Among authors: kuhner mk. Genome Med. 2019 Mar 12;11(1):14. doi: 10.1186/s13073-019-0625-y. Genome Med. 2019. PMID: 30867038 Free PMC article.
Temporal and spatial evolution of somatic chromosomal alterations: a case-cohort study of Barrett's esophagus.
Li X, Galipeau PC, Paulson TG, Sanchez CA, Arnaudo J, Liu K, Sather CL, Kostadinov RL, Odze RD, Kuhner MK, Maley CC, Self SG, Vaughan TL, Blount PL, Reid BJ. Li X, et al. Among authors: kuhner mk. Cancer Prev Res (Phila). 2014 Jan;7(1):114-27. doi: 10.1158/1940-6207.CAPR-13-0289. Epub 2013 Nov 19. Cancer Prev Res (Phila). 2014. PMID: 24253313 Free PMC article.
43 results