Kugel J - Search Results

1

Doxorubicin impacts chromatin binding of HMGB1, Histone H1 and retinoic acid receptor.

Bosire R, Fadel L, Mocsár G, Nánási P Jr, Sen P, Sharma AK, Naseem MU, Kovács A, Kugel J, Kroemer G, Vámosi G, Szabó G. Bosire R, et al. Among authors: kugel j. Sci Rep. 2022 May 16;12(1):8087. doi: 10.1038/s41598-022-11994-z. Sci Rep. 2022. PMID: 35577872 Free PMC article.

2

Interactions of HMGB Proteins with the Genome and the Impact on Disease.

Voong CK, Goodrich JA, Kugel JF. Voong CK, et al. Among authors: kugel jf. Biomolecules. 2021 Oct 2;11(10):1451. doi: 10.3390/biom11101451. Biomolecules. 2021. PMID: 34680084 Free PMC article. Review.

3

The HMGB1 C-Terminal Tail Regulates DNA Bending.

Blair RH, Horn AE, Pazhani Y, Grado L, Goodrich JA, Kugel JF. Blair RH, et al. J Mol Biol. 2016 Oct 9;428(20):4060-4072. doi: 10.1016/j.jmb.2016.08.018. Epub 2016 Aug 21. J Mol Biol. 2016. PMID: 27558111 Free PMC article.

4

Single molecule studies reveal that p53 tetramers dynamically bind response elements containing one or two half sites.

Ly E, Kugel JF, Goodrich JA. Ly E, et al. Sci Rep. 2020 Sep 30;10(1):16176. doi: 10.1038/s41598-020-73234-6. Sci Rep. 2020. PMID: 32999415 Free PMC article.

5

TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability.

Hieb AR, Halsey WA, Betterton MD, Perkins TT, Kugel JF, Goodrich JA. Hieb AR, et al. J Mol Biol. 2007 Sep 21;372(3):619-32. doi: 10.1016/j.jmb.2007.06.061. Epub 2007 Jun 29. J Mol Biol. 2007. PMID: 17681538

6

In new company: U1 snRNA associates with TAF15.

Kugel JF, Goodrich JA. Kugel JF, et al. EMBO Rep. 2009 May;10(5):454-6. doi: 10.1038/embor.2009.65. Epub 2009 Apr 17. EMBO Rep. 2009. PMID: 19373252 Free PMC article. No abstract available.

7

Single molecule studies characterize the kinetic mechanism of tetrameric p53 binding to different native response elements.

Suwita JP, Voong CK, Ly E, Goodrich JA, Kugel JF. Suwita JP, et al. Among authors: kugel jf. PLoS One. 2023 Aug 15;18(8):e0286193. doi: 10.1371/journal.pone.0286193. eCollection 2023. PLoS One. 2023. PMID: 37582100 Free PMC article.

8

Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system.

Blair RH, Goodrich JA, Kugel JF. Blair RH, et al. Methods Mol Biol. 2013;977:203-15. doi: 10.1007/978-1-62703-284-1_16. Methods Mol Biol. 2013. PMID: 23436364

9

From bacteria to humans, chromatin to elongation, and activation to repression: The expanding roles of noncoding RNAs in regulating transcription.

Goodrich JA, Kugel JF. Goodrich JA, et al. Crit Rev Biochem Mol Biol. 2009 Jan-Feb;44(1):3-15. doi: 10.1080/10409230802593995. Crit Rev Biochem Mol Biol. 2009. PMID: 19107624 Free PMC article. Review.

10

Evaluating two steps in transcription using a fluorescence-based electrophoretic mobility shift assay.

Singh A, Miller RC, Archuleta SR, Kugel JF. Singh A, et al. Among authors: kugel jf. Biochem Mol Biol Educ. 2023 Mar;51(2):230-235. doi: 10.1002/bmb.21708. Epub 2023 Jan 4. Biochem Mol Biol Educ. 2023. PMID: 36597896 Review.

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