Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

124 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
The N-terminal Proline Hinge Motif Controls the Structure of Bovine Herpesvirus 1-encoded Inhibitor of the Transporter Associated with Antigen Processing Required for its Immunomodulatory Function.
Graul M, Karska N, Wąchalska M, Krupa P, Ślusarz MJ, Lubocki M, Bieńkowska-Szewczyk K, Rodziewicz-Motowidło S, Sieradzan AK, Lipińska AD. Graul M, et al. Among authors: krupa p. J Mol Biol. 2023 Mar 1;435(5):167964. doi: 10.1016/j.jmb.2023.167964. Epub 2023 Jan 13. J Mol Biol. 2023. PMID: 36646375 Free article.
Lessons from application of the UNRES force field to predictions of structures of CASP10 targets.
He Y, Mozolewska MA, Krupa P, Sieradzan AK, Wirecki TK, Liwo A, Kachlishvili K, Rackovsky S, Jagiela D, Ślusarz R, Czaplewski CR, Ołdziej S, Scheraga HA. He Y, et al. Among authors: krupa p. Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):14936-41. doi: 10.1073/pnas.1313316110. Epub 2013 Aug 26. Proc Natl Acad Sci U S A. 2013. PMID: 23980156 Free PMC article.
A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions.
Liwo A, Baranowski M, Czaplewski C, Gołaś E, He Y, Jagieła D, Krupa P, Maciejczyk M, Makowski M, Mozolewska MA, Niadzvedtski A, Ołdziej S, Scheraga HA, Sieradzan AK, Slusarz R, Wirecki T, Yin Y, Zaborowski B. Liwo A, et al. Among authors: krupa p. J Mol Model. 2014 Aug;20(8):2306. doi: 10.1007/s00894-014-2306-5. Epub 2014 Jul 15. J Mol Model. 2014. PMID: 25024008 Free PMC article.
Physics-based potentials for the coupling between backbone- and side-chain-local conformational states in the UNited RESidue (UNRES) force field for protein simulations.
Sieradzan AK, Krupa P, Scheraga HA, Liwo A, Czaplewski C. Sieradzan AK, et al. Among authors: krupa p. J Chem Theory Comput. 2015 Feb 10;11(2):817-31. doi: 10.1021/ct500736a. J Chem Theory Comput. 2015. PMID: 25691834 Free PMC article.
The UNited RESidue (UNRES) model of polypeptide chains is a coarse-grained model in which each amino-acid residue is reduced to two interaction sites, namely, a united peptide group (p) located halfway between the two neighboring alpha-carbon atoms (Calphas), which serve o …
The UNited RESidue (UNRES) model of polypeptide chains is a coarse-grained model in which each amino-acid residue is reduced to two interact …
Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.
Krupa P, Mozolewska MA, Wiśniewska M, Yin Y, He Y, Sieradzan AK, Ganzynkowicz R, Lipska AG, Karczyńska A, Ślusarz M, Ślusarz R, Giełdoń A, Czaplewski C, Jagieła D, Zaborowski B, Scheraga HA, Liwo A. Krupa P, et al. Bioinformatics. 2016 Nov 1;32(21):3270-3278. doi: 10.1093/bioinformatics/btw404. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378298 Free PMC article.
Role of the sulfur to α-carbon thioether bridges in thurincin H.
Mozolewska MA, Sieradzan AK, Niadzvedstki A, Czaplewski C, Liwo A, Krupa P. Mozolewska MA, et al. Among authors: krupa p. J Biomol Struct Dyn. 2017 Oct;35(13):2868-2879. doi: 10.1080/07391102.2016.1234414. Epub 2016 Oct 5. J Biomol Struct Dyn. 2017. PMID: 27615507
What Makes Telomeres Unique?
Sieradzan AK, Krupa P, Wales DJ. Sieradzan AK, et al. Among authors: krupa p. J Phys Chem B. 2017 Mar 16;121(10):2207-2219. doi: 10.1021/acs.jpcb.6b08780. Epub 2017 Mar 1. J Phys Chem B. 2017. PMID: 28194966
124 results