Kozlikova B - Search Results

1

Vivern-A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures.

Kutak D, Selzer MN, Byska J, Ganuza ML, Barisic I, Kozlikova B, Miao H. Kutak D, et al. Among authors: kozlikova b. IEEE Trans Vis Comput Graph. 2022 Dec;28(12):4825-4838. doi: 10.1109/TVCG.2021.3106328. Epub 2022 Oct 26. IEEE Trans Vis Comput Graph. 2022. PMID: 34437064

2

AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics.

Byska J, Le Muzic M, Gröller ME, Viola I, Kozlíková B. Byska J, et al. Among authors: kozlikova b. IEEE Trans Vis Comput Graph. 2016 Jan;22(1):747-56. doi: 10.1109/TVCG.2015.2467434. IEEE Trans Vis Comput Graph. 2016. PMID: 26529726

3

Comparative visualization of protein secondary structures.

Kocincová L, Jarešová M, Byška J, Parulek J, Hauser H, Kozlíková B. Kocincová L, et al. Among authors: kozlikova b. BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):23. doi: 10.1186/s12859-016-1449-z. BMC Bioinformatics. 2017. PMID: 28251875 Free PMC article.

4

COZOID: contact zone identifier for visual analysis of protein-protein interactions.

Furmanová K, Byška J, Gröller EM, Viola I, Paleček JJ, Kozlíková B. Furmanová K, et al. Among authors: kozlikova b. BMC Bioinformatics. 2018 Apr 6;19(1):125. doi: 10.1186/s12859-018-2113-6. BMC Bioinformatics. 2018. PMID: 29625561 Free PMC article.

5

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.

Jurcik A, Bednar D, Byska J, Marques SM, Furmanova K, Daniel L, Kokkonen P, Brezovsky J, Strnad O, Stourac J, Pavelka A, Manak M, Damborsky J, Kozlikova B. Jurcik A, et al. Among authors: kozlikova b. Bioinformatics. 2018 Oct 15;34(20):3586-3588. doi: 10.1093/bioinformatics/bty386. Bioinformatics. 2018. PMID: 29741570 Free PMC article.

6

Multiscale Molecular Visualization.

Miao H, Klein T, Kouřil D, Mindek P, Schatz K, Gröller ME, Kozlíková B, Isenberg T, Viola I. Miao H, et al. Among authors: kozlikova b. J Mol Biol. 2019 Mar 15;431(6):1049-1070. doi: 10.1016/j.jmb.2018.09.004. Epub 2018 Sep 15. J Mol Biol. 2019. PMID: 30227136 Review.

7

Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes.

Furmanova K, Jurcik A, Kozlikova B, Hauser H, Byska J. Furmanova K, et al. Among authors: kozlikova b. IEEE Trans Vis Comput Graph. 2020 Jan;26(1):843-852. doi: 10.1109/TVCG.2019.2934333. Epub 2019 Aug 19. IEEE Trans Vis Comput Graph. 2020. PMID: 31425101

8

Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool.

Byska J, Jurcik A, Furmanova K, Kozlikova B, Palecek JJ. Byska J, et al. Among authors: kozlikova b. Methods Mol Biol. 2020;2074:81-94. doi: 10.1007/978-1-4939-9873-9_7. Methods Mol Biol. 2020. PMID: 31583632

9

ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening.

Sabando MV, Ulbrich P, Selzer M, Byska J, Mican J, Ponzoni I, Soto AJ, Ganuza ML, Kozlikova B. Sabando MV, et al. Among authors: kozlikova b. IEEE Trans Vis Comput Graph. 2021 Feb;27(2):891-901. doi: 10.1109/TVCG.2020.3030438. Epub 2021 Jan 29. IEEE Trans Vis Comput Graph. 2021. PMID: 33048734

10

LoopGrafter: Visual Support for the Grafting Workflow of Protein Loops.

Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Pinto GP, Bednar D, FurmanovA K, KozlikovA B. Opaleny F, et al. Among authors: kozlikova b. IEEE Trans Vis Comput Graph. 2021 Sep 29;PP. doi: 10.1109/TVCG.2021.3114755. Online ahead of print. IEEE Trans Vis Comput Graph. 2021. PMID: 34587016

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