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Drug binding dynamics of the dimeric SARS-CoV-2 main protease, determined by molecular dynamics simulation.
Sci Rep. 2020 Oct 12;10(1):16986. doi: 10.1038/s41598-020-74099-5.
Sci Rep. 2020.
PMID: 33046764
Free PMC article.
Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock.
Shinohara Y, Koyama YM, Ukai-Tadenuma M, Hirokawa T, Kikuchi M, Yamada RG, Ukai H, Fujishima H, Umehara T, Tainaka K, Ueda HR.
Shinohara Y, et al. Among authors: koyama ym.
Mol Cell. 2017 Sep 7;67(5):783-798.e20. doi: 10.1016/j.molcel.2017.08.009.
Mol Cell. 2017.
PMID: 28886336
Free article.
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Perturbation analyses of intermolecular interactions.
Koyama YM, Kobayashi TJ, Ueda HR.
Koyama YM, et al.
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug;84(2 Pt 2):026704. doi: 10.1103/PhysRevE.84.026704. Epub 2011 Aug 12.
Phys Rev E Stat Nonlin Soft Matter Phys. 2011.
PMID: 21929141
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Perturbational formulation of principal component analysis in molecular dynamics simulation.
Koyama YM, Kobayashi TJ, Tomoda S, Ueda HR.
Koyama YM, et al.
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Oct;78(4 Pt 2):046702. doi: 10.1103/PhysRevE.78.046702. Epub 2008 Oct 7.
Phys Rev E Stat Nonlin Soft Matter Phys. 2008.
PMID: 18999556
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