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Conserved recombination patterns across coronavirus subgenera.
de Klerk A, Swanepoel P, Lourens R, Zondo M, Abodunran I, Lytras S, MacLean OA, Robertson D, Kosakovsky Pond SL, Zehr JD, Kumar V, Stanhope MJ, Harkins G, Murrell B, Martin DP. de Klerk A, et al. Among authors: kosakovsky pond sl. Virus Evol. 2022 Jun 14;8(2):veac054. doi: 10.1093/ve/veac054. eCollection 2022. Virus Evol. 2022. PMID: 35814334 Free PMC article.
Modeling HIV-1 drug resistance as episodic directional selection.
Murrell B, de Oliveira T, Seebregts C, Kosakovsky Pond SL, Scheffler K; Southern African Treatment and Resistance Network-SATuRN Consortium. Murrell B, et al. Among authors: kosakovsky pond sl. PLoS Comput Biol. 2012;8(5):e1002507. doi: 10.1371/journal.pcbi.1002507. Epub 2012 May 10. PLoS Comput Biol. 2012. PMID: 22589711 Free PMC article.
Detecting individual sites subject to episodic diversifying selection.
Murrell B, Wertheim JO, Moola S, Weighill T, Scheffler K, Kosakovsky Pond SL. Murrell B, et al. Among authors: kosakovsky pond sl. PLoS Genet. 2012;8(7):e1002764. doi: 10.1371/journal.pgen.1002764. Epub 2012 Jul 12. PLoS Genet. 2012. PMID: 22807683 Free PMC article.
FUBAR: a fast, unconstrained bayesian approximation for inferring selection.
Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, Scheffler K. Murrell B, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2013 May;30(5):1196-205. doi: 10.1093/molbev/mst030. Epub 2013 Feb 18. Mol Biol Evol. 2013. PMID: 23420840 Free PMC article.
RELAX: detecting relaxed selection in a phylogenetic framework.
Wertheim JO, Murrell B, Smith MD, Kosakovsky Pond SL, Scheffler K. Wertheim JO, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2015 Mar;32(3):820-32. doi: 10.1093/molbev/msu400. Epub 2014 Dec 23. Mol Biol Evol. 2015. PMID: 25540451 Free PMC article.
Gene-wide identification of episodic selection.
Murrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, Aylward A, Eren K, Pollner T, Martin DP, Smith DM, Scheffler K, Kosakovsky Pond SL. Murrell B, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2015 May;32(5):1365-71. doi: 10.1093/molbev/msv035. Epub 2015 Feb 19. Mol Biol Evol. 2015. PMID: 25701167 Free PMC article.
155 results