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Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI).
Sumner LW, Amberg A, Barrett D, Beale MH, Beger R, Daykin CA, Fan TW, Fiehn O, Goodacre R, Griffin JL, Hankemeier T, Hardy N, Harnly J, Higashi R, Kopka J, Lane AN, Lindon JC, Marriott P, Nicholls AW, Reily MD, Thaden JJ, Viant MR. Sumner LW, et al. Among authors: kopka j. Metabolomics. 2007 Sep;3(3):211-221. doi: 10.1007/s11306-007-0082-2. Metabolomics. 2007. PMID: 24039616 Free PMC article.
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.
Salek RM, Neumann S, Schober D, Hummel J, Billiau K, Kopka J, Correa E, Reijmers T, Rosato A, Tenori L, Turano P, Marin S, Deborde C, Jacob D, Rolin D, Dartigues B, Conesa P, Haug K, Rocca-Serra P, O'Hagan S, Hao J, van Vliet M, Sysi-Aho M, Ludwig C, Bouwman J, Cascante M, Ebbels T, Griffin JL, Moing A, Nikolski M, Oresic M, Sansone SA, Viant MR, Goodacre R, Günther UL, Hankemeier T, Luchinat C, Walther D, Steinbeck C. Salek RM, et al. Among authors: kopka j. Metabolomics. 2015;11(6):1587-1597. doi: 10.1007/s11306-015-0810-y. Epub 2015 May 26. Metabolomics. 2015. PMID: 26491418 Free PMC article.
A proposed framework for the description of plant metabolomics experiments and their results.
Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, Kopka J, Lane GA, Lange BM, Liu JR, Mendes P, Nikolau BJ, Oliver SG, Paton NW, Rhee S, Roessner-Tunali U, Saito K, Smedsgaard J, Sumner LW, Wang T, Walsh S, Wurtele ES, Kell DB. Jenkins H, et al. Among authors: kopka j. Nat Biotechnol. 2004 Dec;22(12):1601-6. doi: 10.1038/nbt1041. Nat Biotechnol. 2004. PMID: 15583675
Potential of metabolomics as a functional genomics tool.
Bino RJ, Hall RD, Fiehn O, Kopka J, Saito K, Draper J, Nikolau BJ, Mendes P, Roessner-Tunali U, Beale MH, Trethewey RN, Lange BM, Wurtele ES, Sumner LW. Bino RJ, et al. Among authors: kopka j. Trends Plant Sci. 2004 Sep;9(9):418-25. doi: 10.1016/j.tplants.2004.07.004. Trends Plant Sci. 2004. PMID: 15337491 No abstract available.
Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics.
Mumm R, Hageman JA, Calingacion MN, de Vos RCH, Jonker HH, Erban A, Kopka J, Hansen TH, Laursen KH, Schjoerring JK, Ward JL, Beale MH, Jongee S, Rauf A, Habibi F, Indrasari SD, Sakhan S, Ramli A, Romero M, Reinke RF, Ohtsubo K, Boualaphanh C, Fitzgerald MA, Hall RD. Mumm R, et al. Among authors: kopka j. Metabolomics. 2016;12:38. doi: 10.1007/s11306-015-0925-1. Epub 2016 Jan 23. Metabolomics. 2016. PMID: 26848289 Free PMC article.
Metabolite profiling for plant functional genomics.
Fiehn O, Kopka J, Dörmann P, Altmann T, Trethewey RN, Willmitzer L. Fiehn O, et al. Among authors: kopka j. Nat Biotechnol. 2000 Nov;18(11):1157-61. doi: 10.1038/81137. Nat Biotechnol. 2000. PMID: 11062433
248 results