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Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma.
Löffler MW, Mohr C, Bichmann L, Freudenmann LK, Walzer M, Schroeder CM, Trautwein N, Hilke FJ, Zinser RS, Mühlenbruch L, Kowalewski DJ, Schuster H, Sturm M, Matthes J, Riess O, Czemmel S, Nahnsen S, Königsrainer I, Thiel K, Nadalin S, Beckert S, Bösmüller H, Fend F, Velic A, Maček B, Haen SP, Buonaguro L, Kohlbacher O, Stevanović S, Königsrainer A; HEPAVAC Consortium; Rammensee HG. Löffler MW, et al. Among authors: kohlbacher o. Genome Med. 2019 Apr 30;11(1):28. doi: 10.1186/s13073-019-0636-8. Genome Med. 2019. PMID: 31039795 Free PMC article.
SNEP: SNP-derived epitope prediction program for minor H antigens.
Schuler MM, Dönnes P, Nastke MD, Kohlbacher O, Rammensee HG, Stevanovic S. Schuler MM, et al. Among authors: kohlbacher o. Immunogenetics. 2005 Dec;57(11):816-20. doi: 10.1007/s00251-005-0054-5. Epub 2005 Dec 10. Immunogenetics. 2005. PMID: 16341860
TOPP--the OpenMS proteomics pipeline.
Kohlbacher O, Reinert K, Gröpl C, Lange E, Pfeifer N, Schulz-Trieglaff O, Sturm M. Kohlbacher O, et al. Bioinformatics. 2007 Jan 15;23(2):e191-7. doi: 10.1093/bioinformatics/btl299. Bioinformatics. 2007. PMID: 17237091
EpiToolKit--a web server for computational immunomics.
Feldhahn M, Thiel P, Schuler MM, Hillen N, Stevanovic S, Rammensee HG, Kohlbacher O. Feldhahn M, et al. Among authors: kohlbacher o. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W519-22. doi: 10.1093/nar/gkn229. Epub 2008 Apr 24. Nucleic Acids Res. 2008. PMID: 18440979 Free PMC article.
253 results