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Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity.
Hoopes G, Meng X, Hamilton JP, Achakkagari SR, de Alves Freitas Guesdes F, Bolger ME, Coombs JJ, Esselink D, Kaiser NR, Kodde L, Kyriakidou M, Lavrijssen B, van Lieshout N, Shereda R, Tuttle HK, Vaillancourt B, Wood JC, de Boer JM, Bornowski N, Bourke P, Douches D, van Eck HJ, Ellis D, Feldman MJ, Gardner KM, Hopman JCP, Jiang J, De Jong WS, Kuhl JC, Novy RG, Oome S, Sathuvalli V, Tan EH, Ursum RA, Vales MI, Vining K, Visser RGF, Vossen J, Yencho GC, Anglin NL, Bachem CWB, Endelman JB, Shannon LM, Strömvik MV, Tai HH, Usadel B, Buell CR, Finkers R. Hoopes G, et al. Among authors: kodde l. Mol Plant. 2022 Mar 7;15(3):520-536. doi: 10.1016/j.molp.2022.01.003. Epub 2022 Jan 10. Mol Plant. 2022. PMID: 35026436 Free article.
Solyntus, the New Highly Contiguous Reference Genome for Potato (Solanum tuberosum).
van Lieshout N, van der Burgt A, de Vries ME, Ter Maat M, Eickholt D, Esselink D, van Kaauwen MPW, Kodde LP, Visser RGF, Lindhout P, Finkers R. van Lieshout N, et al. Among authors: kodde lp. G3 (Bethesda). 2020 Oct 5;10(10):3489-3495. doi: 10.1534/g3.120.401550. G3 (Bethesda). 2020. PMID: 32759330 Free PMC article.
Allelic variants of the NLR protein Rpi-chc1 differentially recognize members of the Phytophthora infestans PexRD12/31 effector superfamily through the leucine-rich repeat domain.
Monino-Lopez D, Nijenhuis M, Kodde L, Kamoun S, Salehian H, Schentsnyi K, Stam R, Lokossou A, Abd-El-Haliem A, Visser RGF, Vossen JH. Monino-Lopez D, et al. Among authors: kodde l. Plant J. 2021 Jul;107(1):182-197. doi: 10.1111/tpj.15284. Epub 2021 May 29. Plant J. 2021. PMID: 33882622 Free PMC article.
Insights from the first genome assembly of Onion (Allium cepa).
Finkers R, van Kaauwen M, Ament K, Burger-Meijer K, Egging R, Huits H, Kodde L, Kroon L, Shigyo M, Sato S, Vosman B, van Workum W, Scholten O. Finkers R, et al. Among authors: kodde l. G3 (Bethesda). 2021 Sep 6;11(9):jkab243. doi: 10.1093/g3journal/jkab243. G3 (Bethesda). 2021. PMID: 34544132 Free PMC article.
Cisgenic apple trees; development, characterization, and performance.
Krens FA, Schaart JG, van der Burgh AM, Tinnenbroek-Capel IE, Groenwold R, Kodde LP, Broggini GA, Gessler C, Schouten HJ. Krens FA, et al. Among authors: kodde lp. Front Plant Sci. 2015 Apr 27;6:286. doi: 10.3389/fpls.2015.00286. eCollection 2015. Front Plant Sci. 2015. PMID: 25964793 Free PMC article.
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