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QIIME allows analysis of high-throughput community sequencing data.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Among authors: knight r. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.
Origins of the genetic code: the escaped triplet theory.
Yarus M, Caporaso JG, Knight R. Yarus M, et al. Among authors: knight r. Annu Rev Biochem. 2005;74:179-98. doi: 10.1146/annurev.biochem.74.082803.133119. Annu Rev Biochem. 2005. PMID: 15952885 Review.
Global patterns in bacterial diversity.
Lozupone CA, Knight R. Lozupone CA, et al. Among authors: knight r. Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11436-40. doi: 10.1073/pnas.0611525104. Epub 2007 Jun 25. Proc Natl Acad Sci U S A. 2007. PMID: 17592124 Free PMC article.
PyCogent: a toolkit for making sense from sequence.
Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA. Knight R, et al. Genome Biol. 2007;8(8):R171. doi: 10.1186/gb-2007-8-8-r171. Genome Biol. 2007. PMID: 17708774 Free PMC article.
3,331 results