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The computational capabilities of many-to-many protein interaction networks.
Cell Syst. 2023 Jun 21;14(6):430-446. doi: 10.1016/j.cels.2023.05.001.
Cell Syst. 2023.
PMID: 37348461
Review.
The context-dependent, combinatorial logic of BMP signaling.
Klumpe HE, Langley MA, Linton JM, Su CJ, Antebi YE, Elowitz MB.
Klumpe HE, et al.
Cell Syst. 2022 May 18;13(5):388-407.e10. doi: 10.1016/j.cels.2022.03.002. Epub 2022 Apr 13.
Cell Syst. 2022.
PMID: 35421361
Free PMC article.
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Ligand-receptor promiscuity enables cellular addressing.
Su CJ, Murugan A, Linton JM, Yeluri A, Bois J, Klumpe H, Langley MA, Antebi YE, Elowitz MB.
Su CJ, et al.
Cell Syst. 2022 May 18;13(5):408-425.e12. doi: 10.1016/j.cels.2022.03.001. Epub 2022 Apr 13.
Cell Syst. 2022.
PMID: 35421362
Free PMC article.
Item in Clipboard
Combinatorial Signal Perception in the BMP Pathway.
Antebi YE, Linton JM, Klumpe H, Bintu B, Gong M, Su C, McCardell R, Elowitz MB.
Antebi YE, et al.
Cell. 2017 Sep 7;170(6):1184-1196.e24. doi: 10.1016/j.cell.2017.08.015.
Cell. 2017.
PMID: 28886385
Free PMC article.
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Deep Neural Networks for Predicting Single-Cell Responses and Probability Landscapes.
Klumpe HE, Lugagne JB, Khalil AS, Dunlop MJ.
Klumpe HE, et al.
ACS Synth Biol. 2023 Aug 18;12(8):2367-2381. doi: 10.1021/acssynbio.3c00203. Epub 2023 Jul 19.
ACS Synth Biol. 2023.
PMID: 37467372
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Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems.
Gomaa AA, Klumpe HE, Luo ML, Selle K, Barrangou R, Beisel CL.
Gomaa AA, et al. Among authors: klumpe he.
mBio. 2014 Jan 28;5(1):e00928-13. doi: 10.1128/mBio.00928-13.
mBio. 2014.
PMID: 24473129
Free PMC article.
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