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Mutation Maker, An Open Source Oligo Design Platform for Protein Engineering.
Hiraga K, Mejzlik P, Marcisin M, Vostrosablin N, Gromek A, Arnold J, Wiewiora S, Svarba R, Prihoda D, Clarova K, Klempir O, Navratil J, Tupa O, Vazquez-Otero A, Walas MW, Holy L, Spale M, Kotowski J, Dzamba D, Temesi G, Russell JH, Marshall NM, Murphy GS, Bitton DA. Hiraga K, et al. Among authors: klempir o. ACS Synth Biol. 2021 Feb 19;10(2):357-370. doi: 10.1021/acssynbio.0c00542. Epub 2021 Jan 12. ACS Synth Biol. 2021. PMID: 33433999 Free article.
A deep learning genome-mining strategy for biosynthetic gene cluster prediction.
Hannigan GD, Prihoda D, Palicka A, Soukup J, Klempir O, Rampula L, Durcak J, Wurst M, Kotowski J, Chang D, Wang R, Piizzi G, Temesi G, Hazuda DJ, Woelk CH, Bitton DA. Hannigan GD, et al. Among authors: klempir o. Nucleic Acids Res. 2019 Oct 10;47(18):e110. doi: 10.1093/nar/gkz654. Nucleic Acids Res. 2019. PMID: 31400112 Free PMC article.
Automatic substantia nigra segmentation in neuromelanin-sensitive MRI by deep neural network in patients with prodromal and manifest synucleinopathy.
Krupička R, Mareček S, Malá C, Lang M, Klempíř O, Duspivová T, Široká R, Jarošíková T, Keller J, Šonka K, Růžička E, Dušek P. Krupička R, et al. Among authors: klempir o. Physiol Res. 2019 Dec 30;68(Suppl 4):S453-S458. doi: 10.33549/physiolres.934380. Physiol Res. 2019. PMID: 32118476 Free article. Clinical Trial.
Communicating computational workflows in a regulatory environment.
Keeney JG, Gulzar N, Baker JB, Klempir O, Hannigan GD, Bitton DA, Maritz JM, King CHS 4th, Patel JA, Duncan P, Mazumder R. Keeney JG, et al. Among authors: klempir o. Drug Discov Today. 2024 Mar;29(3):103884. doi: 10.1016/j.drudis.2024.103884. Epub 2024 Jan 12. Drug Discov Today. 2024. PMID: 38219969 Free article.