Klee E - Search Results

1

Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes.

Lomberk G, Blum Y, Nicolle R, Nair A, Gaonkar KS, Marisa L, Mathison A, Sun Z, Yan H, Elarouci N, Armenoult L, Ayadi M, Ordog T, Lee JH, Oliver G, Klee E, Moutardier V, Gayet O, Bian B, Duconseil P, Gilabert M, Bigonnet M, Garcia S, Turrini O, Delpero JR, Giovannini M, Grandval P, Gasmi M, Secq V, De Reyniès A, Dusetti N, Iovanna J, Urrutia R. Lomberk G, et al. Among authors: klee e. Nat Commun. 2018 May 17;9(1):1978. doi: 10.1038/s41467-018-04383-6. Nat Commun. 2018. PMID: 29773832 Free PMC article.

2

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Asmann YW, Middha S, Hossain A, Baheti S, Li Y, Chai HS, Sun Z, Duffy PH, Hadad AA, Nair A, Liu X, Zhang Y, Klee EW, Kalari KR, Kocher JP. Asmann YW, et al. Bioinformatics. 2012 Jan 15;28(2):277-8. doi: 10.1093/bioinformatics/btr612. Epub 2011 Nov 15. Bioinformatics. 2012. PMID: 22088845 Free PMC article.

3

Global methylation profiling for risk prediction of prostate cancer.

Mahapatra S, Klee EW, Young CY, Sun Z, Jimenez RE, Klee GG, Tindall DJ, Donkena KV. Mahapatra S, et al. Among authors: klee ew, klee gg. Clin Cancer Res. 2012 May 15;18(10):2882-95. doi: 10.1158/1078-0432.CCR-11-2090. Clin Cancer Res. 2012. PMID: 22589488

4

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

Sun Z, Baheti S, Middha S, Kanwar R, Zhang Y, Li X, Beutler AS, Klee E, Asmann YW, Thompson EA, Kocher JP. Sun Z, et al. Among authors: klee e. Bioinformatics. 2012 Aug 15;28(16):2180-1. doi: 10.1093/bioinformatics/bts337. Epub 2012 Jun 10. Bioinformatics. 2012. PMID: 22689387 Free PMC article.

5

RNA sequencing shows transcriptomic changes in rectosigmoid mucosa in patients with irritable bowel syndrome-diarrhea: a pilot case-control study.

Camilleri M, Carlson P, Acosta A, Busciglio I, Nair AA, Gibbons SJ, Farrugia G, Klee EW. Camilleri M, et al. Am J Physiol Gastrointest Liver Physiol. 2014 Jun 15;306(12):G1089-98. doi: 10.1152/ajpgi.00068.2014. Epub 2014 Apr 24. Am J Physiol Gastrointest Liver Physiol. 2014. PMID: 24763552 Free PMC article.

6

Bioinformatics for clinical next generation sequencing.

Oliver GR, Hart SN, Klee EW. Oliver GR, et al. Clin Chem. 2015 Jan;61(1):124-35. doi: 10.1373/clinchem.2014.224360. Epub 2014 Dec 1. Clin Chem. 2015. PMID: 25451870 Review.

7

"The molecule's the thing:" the promise of molecular modeling and dynamic simulations in aiding the prioritization and interpretation of genomic testing results.

Oliver GR, Zimmermann MT, Klee EW, Urrutia RA. Oliver GR, et al. F1000Res. 2016 Apr 27;5:766. doi: 10.12688/f1000research.8600.3. eCollection 2016. F1000Res. 2016. PMID: 27408685 Free PMC article.

8

A Novel Kleefstra Syndrome-associated Variant That Affects the Conserved TPLX Motif within the Ankyrin Repeat of EHMT1 Leads to Abnormal Protein Folding.

Blackburn PR, Tischer A, Zimmermann MT, Kemppainen JL, Sastry S, Knight Johnson AE, Cousin MA, Boczek NJ, Oliver G, Misra VK, Gavrilova RH, Lomberk G, Auton M, Urrutia R, Klee EW. Blackburn PR, et al. Among authors: klee ew. J Biol Chem. 2017 Mar 3;292(9):3866-3876. doi: 10.1074/jbc.M116.770545. Epub 2017 Jan 5. J Biol Chem. 2017. PMID: 28057753 Free PMC article.

9

Novel Pathogenic Variant in TGFBR2 Confirmed by Molecular Modeling Is a Rare Cause of Loeys-Dietz Syndrome.

Zimmermann MT, Urrutia RA, Blackburn PR, Cousin MA, Boczek NJ, Klee EW, Macmurdo C, Atwal PS. Zimmermann MT, et al. Case Rep Genet. 2017;2017:7263780. doi: 10.1155/2017/7263780. Epub 2017 Jan 9. Case Rep Genet. 2017. PMID: 28163941 Free PMC article.

10

Molecular modeling and molecular dynamic simulation of the effects of variants in the TGFBR2 kinase domain as a paradigm for interpretation of variants obtained by next generation sequencing.

Zimmermann MT, Urrutia R, Oliver GR, Blackburn PR, Cousin MA, Bozeck NJ, Klee EW. Zimmermann MT, et al. PLoS One. 2017 Feb 9;12(2):e0170822. doi: 10.1371/journal.pone.0170822. eCollection 2017. PLoS One. 2017. PMID: 28182693 Free PMC article.

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