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The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems.
Pawlowski J, Kelly-Quinn M, Altermatt F, Apothéloz-Perret-Gentil L, Beja P, Boggero A, Borja A, Bouchez A, Cordier T, Domaizon I, Feio MJ, Filipe AF, Fornaroli R, Graf W, Herder J, van der Hoorn B, Iwan Jones J, Sagova-Mareckova M, Moritz C, Barquín J, Piggott JJ, Pinna M, Rimet F, Rinkevich B, Sousa-Santos C, Specchia V, Trobajo R, Vasselon V, Vitecek S, Zimmerman J, Weigand A, Leese F, Kahlert M. Pawlowski J, et al. Among authors: kahlert m. Sci Total Environ. 2018 Oct 1;637-638:1295-1310. doi: 10.1016/j.scitotenv.2018.05.002. Epub 2018 May 22. Sci Total Environ. 2018. PMID: 29801222 Free article. Review.
Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive.
Hering D, Borja A, Jones JI, Pont D, Boets P, Bouchez A, Bruce K, Drakare S, Hänfling B, Kahlert M, Leese F, Meissner K, Mergen P, Reyjol Y, Segurado P, Vogler A, Kelly M. Hering D, et al. Among authors: kahlert m. Water Res. 2018 Jul 1;138:192-205. doi: 10.1016/j.watres.2018.03.003. Epub 2018 Mar 20. Water Res. 2018. PMID: 29602086 Free article. Review.
Diat.barcode, an open-access curated barcode library for diatoms.
Rimet F, Gusev E, Kahlert M, Kelly MG, Kulikovskiy M, Maltsev Y, Mann DG, Pfannkuchen M, Trobajo R, Vasselon V, Zimmermann J, Bouchez A. Rimet F, et al. Among authors: kahlert m. Sci Rep. 2019 Oct 22;9(1):15116. doi: 10.1038/s41598-019-51500-6. Sci Rep. 2019. PMID: 31641158 Free PMC article.
Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization.
Bailet B, Apothéloz-Perret-Gentil L, Baričević A, Chonova T, Franc A, Frigerio JM, Kelly M, Mora D, Pfannkuchen M, Proft S, Ramon M, Vasselon V, Zimmermann J, Kahlert M. Bailet B, et al. Among authors: kahlert m. Sci Total Environ. 2020 Nov 25;745:140948. doi: 10.1016/j.scitotenv.2020.140948. Epub 2020 Jul 18. Sci Total Environ. 2020. PMID: 32736102 Free article.
European river typologies fail to capture diatom, fish, and macrophyte community composition.
Jupke JF, Birk S, Apostolou A, Aroviita J, Baattrup-Pedersen A, Baláži P, Barešová L, Blanco S, Borrego-Ramos M, van Dam H, Dimitriou E, Feld CK, Ferreira MT, Gecheva G, Gomà J, Hanžek N, Haslev IM, Isheva T, Jamoneau A, Jyrkänkallio-Mikkola J, Kahlert M, Karaouzas I, Karjalainen SM, Olenici A, Panek P, Paril P, Peeters ETHM, Polášek M, Pont D, Pumputyte A, Sandin L, Sochuliaková L, Soininen J, Stanković I, Straka M, Šušnjara M, Sutela T, Tison-Rosebery J, Udovič MG, Verhofstad M, Žutinić P, Schäfer RB. Jupke JF, et al. Among authors: kahlert m. Sci Total Environ. 2023 Oct 20;896:165081. doi: 10.1016/j.scitotenv.2023.165081. Epub 2023 Jun 23. Sci Total Environ. 2023. PMID: 37355122
35 results