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Page 1
Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems.
Science. 2021 Jan 29;371(6528):eaax2656. doi: 10.1126/science.aax2656.
Science. 2021.
PMID: 33509999
Free PMC article.
Clonal transcriptomics identifies mechanisms of chemoresistance and empowers rational design of combination therapies.
Wild SA, Cannell IG, Nicholls A, Kania K, Bressan D; CRUK IMAXT Grand Challenge Team; Hannon GJ, Sawicka K.
Wild SA, et al.
Elife. 2022 Dec 16;11:e80981. doi: 10.7554/eLife.80981.
Elife. 2022.
PMID: 36525288
Free PMC article.
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Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer.
Ali HR, Jackson HW, Zanotelli VRT, Danenberg E, Fischer JR, Bardwell H, Provenzano E; CRUK IMAXT Grand Challenge Team; Rueda OM, Chin SF, Aparicio S, Caldas C, Bodenmiller B.
Ali HR, et al.
Nat Cancer. 2020 Feb;1(2):163-175. doi: 10.1038/s43018-020-0026-6. Epub 2020 Feb 17.
Nat Cancer. 2020.
PMID: 35122013
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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Casas Moreno X, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Küpcü Yoldaş A, Kyoda K, le Tournoulx de la Villegeorges A, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR.
Moore J, et al. Among authors: kupcu yoldas a.
Histochem Cell Biol. 2023 Sep;160(3):223-251. doi: 10.1007/s00418-023-02209-1. Epub 2023 Jul 10.
Histochem Cell Biol. 2023.
PMID: 37428210
Free PMC article.
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Landscapes of cellular phenotypic diversity in breast cancer xenografts and their impact on drug response.
Georgopoulou D, Callari M, Rueda OM, Shea A, Martin A, Giovannetti A, Qosaj F, Dariush A, Chin SF, Carnevalli LS, Provenzano E, Greenwood W, Lerda G, Esmaeilishirazifard E, O'Reilly M, Serra V, Bressan D; IMAXT Consortium; Mills GB, Ali HR, Cosulich SS, Hannon GJ, Bruna A, Caldas C.
Georgopoulou D, et al.
Nat Commun. 2021 Mar 31;12(1):1998. doi: 10.1038/s41467-021-22303-z.
Nat Commun. 2021.
PMID: 33790302
Free PMC article.
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Imaging and Molecular Annotation of Xenographs and Tumours (IMAXT): High throughput data and analysis infrastructure.
González-Solares EA, Dariush A, González-Fernández C, Küpcü Yoldaş A, Molaeinezhad A, Al Sa'd M, Smith L, Whitmarsh T, Millar N, Chornay N, Falciatori I, Fatemi A, Goodwin D, Kuett L, Mulvey CM, Páez Ribes M, Qosaj F, Roth A, Vázquez-García I, Watson SS, Windhager J, Aparicio S, Bodenmiller B, Boyden E, Caldas C, Harris O, Shah SP, Tavaré S; CRUK IMAXT Grand Challenge Team; Bressan D, Hannon GJ, Walton NA.
González-Solares EA, et al. Among authors: kupcu yoldas a.
Biol Imaging. 2023 Apr 14;3:e11. doi: 10.1017/S2633903X23000090. eCollection 2023.
Biol Imaging. 2023.
PMID: 38487685
Free PMC article.
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